Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq534 114 2e-20 seq452 105 8e-18 seq629 104 3e-17 >seq534 Length=463462 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 279467 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 279408 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || | ||| || || || || |||||||| ||||| ||||||||||||| Sbjct 279407 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 279348 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 279347 CAACGACTCTCTCACC 279332 >seq452 Length=654506 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||| || | |||||||||||| |||||||| ||||||| || | || | Sbjct 331776 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 331717 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || ||||| || || || ||||||||||| ||||| || || ||||| | Sbjct 331716 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 331657 Query 33724 C 33724 | Sbjct 331656 C 331656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || || |||| ||| ||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 329674 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 329615 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || |||||||| | ||| || || || || |||||| Sbjct 329614 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 329579 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | ||||||||||| || || || ||||| || || || || ||| Sbjct 333045 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCT 332986 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||||||||| || || Sbjct 332985 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGGTT 332951 >seq629 Length=368953 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| ||||| ||||||| || ||| || || | ||| || || || || ||||||||| Sbjct 322535 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 322594 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 |||||||| ||||| |||| || || | || || ||||| || ||||| || || Sbjct 322595 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 322654 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | ||||| || || || || || || || |||||||| || || || | ||| | Sbjct 322655 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATGGCGT 322714 Query 62808 TTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 322715 CTGTTGGAGCGTTCAGC 322731 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 |||| ||||| ||||||||||||||||| ||||| | || || ||||| | | || Sbjct 326968 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 327027 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || || || || ||||| |||||| || || ||| | | || || |||||| || Sbjct 327028 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAGG 327086 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | ||||||| Sbjct 327087 CTCCAGGTAGATGGCAAAAGCTCCAGG 327113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629659444927920