Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq452 102 1e-16 seq269 100 4e-16 seq629 98.7 1e-15 >seq452 Length=654506 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||| || | |||||| ||||| |||||||| ||||||| || | || | Sbjct 331776 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 331717 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| || ||||| || || ||||| | Sbjct 331716 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 331657 Query 36300 C 36300 | Sbjct 331656 C 331656 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 36428 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 36487 || || ||||||| ||| ||||||||||| ||||| |||||||| ||||| || || || Sbjct 329674 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 329615 Query 36488 CCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || |||||||| | ||| || || || ||||||||| Sbjct 329614 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 329579 >seq269 Length=1198376 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 |||||| |||||| || | |||| | | | ||| || | ||||||||||||||| || Sbjct 621097 TTATTTTTTATTAAATGCCTCCAGTAAACGCAGCAGGTGTAGGAACAGATTGATGATGTC 621156 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| | || | | || ||||| ||||| | || || || || | Sbjct 621157 CAAGTAGAGATTGATCGCAGCCAGTATGTACTCTTCGGGCGATAATTTGTGCATCAGCAA 621216 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || ||||| || || || ||||| ||||| | ||| || || ||||| | |||| Sbjct 621217 ATGAGTGTCGTAAATTATAAATCCACAGAAGAGAAGTGCTCCGGCAGCAGCAAACACCAA 621276 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 621277 CTCTATTGTCTCACT 621291 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 || ||||| | ||| ||||| |||||||| || || | |||||||||||||| ||||| Sbjct 622434 CCCGCTCCGAATTTGCTGAAGTCTCTCTTCGACTGCAAGGTATATGCAGTCAGTCCAAGA 622493 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||||||| || || || ||||||| |||| |||||| |||||| Sbjct 622494 AATACAGCAGTAGTGAGAATAAAGGCTTGCAAGACGATGGACACATCGTAGAAA 622547 >seq629 Length=368953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || || ||||||| || ||| || || ||||| || || || || ||||||||| Sbjct 322535 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 322594 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||| || || |||| || || | || || ||| | || ||||| || || Sbjct 322595 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 322654 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | ||||| || || ||||| || || || |||||||| || || || | ||| | Sbjct 322655 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATGGCGT 322714 Query 65601 TTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 322715 CTGTTGGAGCGTTCAGC 322731 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| ||||| || || || || || || || | | Sbjct 332984 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTTGCTGCCAGGA 333043 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || ||||| || || | || || || || ||| |||| || ||||| ||||||| Sbjct 333044 TAGCGTAATCGGGGTGCTTGGTGGTCAGGGTTGCAGCTGTTTCAGCAGCCAGCGTGTCCA 333103 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | || || || || ||||| Sbjct 333104 GTTCCACTGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 333149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658007524582760