Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq534 123 4e-23 seq452 111 2e-19 seq629 98.7 1e-15 >seq534 Length=463462 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| ||||| ||||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 279467 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 279408 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || | ||||| || || || |||||||| ||||| ||||| ||||||| Sbjct 279407 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 279348 Query 50102 CAACAAGTCTCTCTCC 50117 |||| | |||||| || Sbjct 279347 CAACGACTCTCTCACC 279332 >seq452 Length=654506 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| ||| || |||||||| ||||| |||||||| ||||||| || | || | Sbjct 331776 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 331717 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||||| || || ||||| || |||||||||||||| ||||| || || ||||| | Sbjct 331716 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 331657 Query 50102 CAAC 50105 | || Sbjct 331656 CTAC 331653 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || || |||| ||| ||||||||||| ||||| |||||||| ||||| ||||| || Sbjct 329674 TACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGATCTGGAAG 329615 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || |||||||| | ||| || || || || |||||| Sbjct 329614 CCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 329579 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | ||||||||||| || || || ||||| || || || || ||| Sbjct 333045 GACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCCT 332986 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 |||| || || ||||||||||||||||| || || Sbjct 332985 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGGTT 332951 >seq629 Length=368953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 |||||||||||| ||||||| || ||||| | ||||| || || || || || ||||| Sbjct 322534 GTATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTA 322593 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||||||||| || ||||||| || || | || || || | || ||||| || || Sbjct 322594 ATAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTA 322653 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 79475 | | ||||| || || ||||| || || || |||||||| || || || | ||| Sbjct 322654 TCTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATG 322710 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||||||||| || || || ||| || | || ||||| || || || | Sbjct 318468 TCCACCCATAGAAATGCATGCTGGTCAGCTTGCCGTAGTTGGGTTCTGCAATGTGAATGT 318527 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || || ||||| ||||| ||||| |||||||| ||||| || | ||| || | Sbjct 318528 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 318587 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | || ||||| | || ||||| | | |||| | || || |||| Sbjct 318588 TCTGGGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 318638 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 |||| ||||| ||||||||||||||||| ||||| | || || ||||||| | ||| Sbjct 326968 ACTCTCTTCATGAAGAGATCAGGAATCCAGAGAGCAAAGAAAAGGTCTCTGGCACGCTGC 327027 Query 79999 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 80057 || || || || || ||||| |||||| || || ||| | | || || |||||| || Sbjct 327028 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAGATGCCAAGG 327086 Query 80058 TTCCAAGTATATGGCCATAACTCCCGGTC 80086 |||| ||| ||||| | | |||| |||| Sbjct 327087 CTCCAGGTAGATGGCAAAAGCTCCAGGTC 327115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718088433725960