Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq112 84.2 1e-11 >seq112 Length=2547449 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| ||| | ||||| || |||||||| || || |||||||||||| Sbjct 1632792 CCACCTCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 1632851 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || |||| ||||| ||| || || || | |||||||| | || Sbjct 1632852 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 1632911 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| ||||| || | | | ||| || || | | ||| ||||| |||| | | Sbjct 1632912 ATGCCCTCTTTGTCCTGGATCTTGGCC---TTCACATTCTCAATAGTGTCACTGGGCTCA 1632968 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || || | || || |||||||| |||||| Sbjct 1632969 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCATG 1633019 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| ||| | ||||| || |||||||| || || |||||||||||| Sbjct 1633476 CCACCTCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 1633535 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | || | || |||| ||||| ||| || || || | |||||||| | || Sbjct 1633536 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGA 1633595 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||| ||||| || | | | ||| || || | | ||| ||||| |||| | | Sbjct 1633596 ATGCCCTCTTTGTCCTGGATCTTGGCC---TTCACATTCTCAATGGTGTCACTGGGCTCA 1633652 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || || || || || ||||| || |||||| Sbjct 1633653 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1633703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318699552185922