Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq352 147 3e-30 seq143 147 3e-30 >seq352 Length=848651 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || ||||| || | |||| |||| || |||||| || || || || | Sbjct 57571 GGCACGCGGAAGGCCACGTACGGGCACCTCTTCACGTTGAGGCACACCAGCTTCTCCAGG 57512 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| ||||||| ||| |||| || ||||||| ||||| ||||| |||||||| Sbjct 57511 GATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGCTTCCAGTAC 57452 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 |||||||||||||| ||| | | || || || |||||||| ||||| || | ||| Sbjct 57451 TCCGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAAGGGAGCTCCGATCTCC 57392 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || ||||| ||| ||||||| |||| || || | || || || | ||| Sbjct 57391 ACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGGTAA 57332 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || ||||||||||| || || || || || ||||| | |||| ||| Sbjct 57331 AACTCCAGCGCGTCGATGTCTCCATAGAGCTCCTCCAGCTCTGCAGCCTTCTCCTCCTCT 57272 Query 8972 CCTG 8975 |||| Sbjct 57271 CCTG 57268 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || ||||| ||||| || || Sbjct 55464 TCACCGATGAGGATGAGCCGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGGTGC 55405 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || ||||| | ||||| || | |||||| || | ||||||| || |||||||| Sbjct 55404 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 55345 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| || || || |||| ||||| | ||||| || | | | ||| Sbjct 55344 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 55285 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 || | || || || | |||||| ||| | | || ||||||||||||| |||| Sbjct 55284 ACGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGGTGACCGAGGGGGGGTACA 55230 >seq143 Length=2104023 Score = 147 bits (162), Expect = 3e-30 Identities = 220/311 (71%), Gaps = 1/311 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 1115235 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1115176 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || ||||||||||| |||||||| | |||| Sbjct 1115175 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGGG 1115116 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| | || |||| || ||||| || || || || || || | || | || Sbjct 1115115 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCGATTTCTACCATTG 1115056 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||||| || || || ||||| || | || ||| | |||| ||||| Sbjct 1115055 TTTCGCCAAAGATGGCACCTGGTCGTGGTTTTTCTACAAGGAGTCCTGGATACAGCTCCA 1114996 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 1114995 TAGCATCTATGTCTCCATAAAGCTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 1114936 Query 8978 TTATTAATAAA 8988 ||||| || || Sbjct 1114935 TTATTGATGAA 1114925 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || || | || || ||| ||| |||||||| || ||||||| Sbjct 1113224 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1113165 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||| || ||||| || ||||| |||||||| | ||| || Sbjct 1113164 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 1113105 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 1113104 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 1113045 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | ||| ||||||||||| || || || ||| Sbjct 1113044 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCTATCATC 1112985 Query 9862 TG 9863 || Sbjct 1112984 TG 1112983 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 1111548 ACCTTTAACACCCATTGGTGTTGGACAGTCACGTCCTACCGGGGGAAGGCTTCTTGTGTA 1111489 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||| ||||||| || ||| | ||||| ||||| | || Sbjct 1111488 ATAGGAAAGATTGGAATAAGTTTCCCAGTTTTTGTAATTATAGTCACTATTGTAAGTTGG 1111429 Query 10409 AGGGCTGTCAATCAAATCGGATCT 10432 |||||||||||||||| ||||| Sbjct 1111428 TGGGCTGTCAATCAAATGTGATCT 1111405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708346880566160