Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq38 132 8e-27 >seq38 Length=8679506 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 21645 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 21704 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 21705 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 21764 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 21765 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 21824 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | |||||||| | || || || || Sbjct 21825 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTATGCCCTCAAGCGCCAGGG 21884 Query 16672 CCG 16674 || Sbjct 21885 ACG 21887 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 23488 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 23429 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 23428 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 23369 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 23368 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 23309 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | |||||||| | || || || || Sbjct 23308 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTATGCCCTCAAGCGCCAGGG 23249 Query 16672 CCG 16674 || Sbjct 23248 ACG 23246 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 42314 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 42373 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 42374 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 42433 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 42434 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 42493 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 42494 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 42553 Query 16672 CCG 16674 || Sbjct 42554 ACG 42556 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 50560 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 50501 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 50500 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 50441 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 50440 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 50381 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 50380 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 50321 Query 16672 CCG 16674 || Sbjct 50320 ACG 50318 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 59354 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 59413 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 59414 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 59473 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 59474 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 59533 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 59534 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 59593 Query 16672 CCG 16674 || Sbjct 59594 ACG 59596 Score = 127 bits (140), Expect = 3e-25 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 64686 CGCCAAGCGGCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 64627 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 64626 CCGGCGCCTGGCGCGGCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 64567 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||||| ||| ||| |||| || || || ||| ||||| Sbjct 64566 GCGCGGCGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGA 64507 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 64506 GCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTCTACGCCCTCAAGCGCCAGGG 64447 Query 16672 CCG 16674 || Sbjct 64446 ACG 64444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056832486677