Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq432 129 1e-24 >seq432 Length=995019 Score = 129 bits (142), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || | ||| | || |||||||| | ||| ||| || ||||| || ||||||| Sbjct 871969 TCCGCCTCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGA 871910 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | || || || ||||||||||| | ||| || |||||| Sbjct 871909 CAGGGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTG---ATCTGG 871853 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || |||||||| || || || || || || || | || || | || Sbjct 871852 GGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTC 871793 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 871792 AACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 871742 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || ||||| ||||| || ||||| | || |||||||||||| Sbjct 871497 AGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 871438 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | ||||| || || |||||||| | ||| || || ||| || || || || Sbjct 871437 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGG---TCCGGGGGAATGCCCTCCTTG 871381 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || || || || | || || | ||| ||||| | ||||| Sbjct 871380 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATG 871321 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||||||||| |||||||| Sbjct 871320 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 871286 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || |||||||||||||| | ||||| || || ||| Sbjct 871704 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGTTTGCCAGCAAAG 871645 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| | ||| || || ||| || || || || |||||||| || || || || Sbjct 871644 ATCAGCCTCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACA 871588 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || | ||| ||||| | ||||| ||||| || |||| |||||| Sbjct 871587 TTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTACCTGTCAAGGTCTTG 871528 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 871527 ACAAAGATCTGCAT 871514 Score = 107 bits (118), Expect = 5e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || ||||||||||| || ||||||| || ||||| || ||| Sbjct 872181 AGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 872122 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||| | ||| || |||||| || || || || Sbjct 872121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTG---GTCTGGGGGAATGCCCTCCTTG 872065 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || || || || || | || || | || || || | ||||| Sbjct 872064 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATG 872005 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || |||| |||||||| || ||||||||| Sbjct 872004 GTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 871969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179350768385342