Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq432 134 1e-26 seq112 131 2e-25 >seq432 Length=995019 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||||||| ||||| Sbjct 871953 AGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 871894 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || |||| |||||| || || ||||| ||||| || || Sbjct 871893 TCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCC 871834 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || ||||| | || | |||| Sbjct 871833 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTC 871774 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || ||||| ||||| Sbjct 871773 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 871742 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || |||||||| |||||||| || | | ||||||| | ||| Sbjct 872181 AGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 872122 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| || || || || Sbjct 872121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 872062 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 872061 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTC 872002 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || || || || || |||||| Sbjct 872001 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 871969 >seq112 Length=2547449 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| || ||||||||||| | | |||||| | || Sbjct 1632807 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1632866 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || ||||||||| |||||||| || ||||| || Sbjct 1632867 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1632926 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 1632927 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1632986 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || |||||||| ||||| Sbjct 1632987 TTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 1633018 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | ||||||| | ||| Sbjct 1633035 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCT 1633094 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 1633095 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633154 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 1633155 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633214 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 1633215 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||||||| ||||||||||||||||||| Sbjct 1633734 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCT 1633793 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| ||||| || || || || || ||| Sbjct 1633794 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1633853 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| | || || || || | || | ||||||||| |||| || Sbjct 1633854 ACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1633913 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 1633914 TTCACAAAGATCTGCATGTT 1633933 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || || ||||| || |||||||| || | | ||||||| | ||| Sbjct 1633263 AGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1633322 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 1633323 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633382 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || || | || | |||| Sbjct 1633383 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1633442 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 1633443 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633474 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| || ||||||||||| | | |||||| | || Sbjct 1633491 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1633550 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || ||||||||| |||||||| || ||||| || Sbjct 1633551 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1633610 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 1633611 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633670 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 1633671 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1633702 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | |||||| | ||| Sbjct 1632579 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCT 1632638 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || || || ||||| || || Sbjct 1632639 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 1632698 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | || || || || | || | |||| Sbjct 1632699 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGTC 1632758 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| || ||||| Sbjct 1632759 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1632790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499519332945160