Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 5e-13 seq629 82.4 8e-11 seq432 82.4 8e-11 >seq112 Length=2547449 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| || | || | | | || ||||| || ||||||||||| Sbjct 1633703 GCCACCTCTCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 1633762 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| || | ||| ||||| ||||| Sbjct 1633763 CAGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGG 1633822 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | ||| ||| | | ||| || Sbjct 1633823 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAAC 1633882 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || |||||||| || || ||||| ||||||||| Sbjct 1633883 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633931 >seq629 Length=368953 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| || || | || || ||||||||||| ||| |||||||| ||||||||| Sbjct 325334 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGATTG 325393 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTT 153761 || || || ||||| | ||| ||| | |||||||| ||| || ||||| || | | Sbjct 325394 CTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTTCCAGTCTCTGTCTGGGAT 325453 Query 153762 TCGACGAT 153769 |||| ||| Sbjct 325454 TCGATGAT 325461 >seq432 Length=995019 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| | |||| || | ||| | | || ||||| || |||||||||||| | Sbjct 871968 CCGCCTCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 871909 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || || || || | |||| || | ||| || || || || Sbjct 871908 AGGGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGA 871849 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 871848 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 871789 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || |||||||| || || ||||||||||||||| Sbjct 871788 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATG 871741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496137782308080