Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq432 118 1e-21 seq112 114 1e-20 >seq432 Length=995019 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||||||||| || ||||| ||| || ||||| | Sbjct 872184 CGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCA 872125 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||| || || || |||||||||||| Sbjct 872124 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTG 872065 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | |||||| || | ||| | Sbjct 872064 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATG 872005 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 872004 GTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 871970 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | ||||||||||| || || ||||| || || ||||| Sbjct 871500 CGCAGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 871441 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| |||||| | |||||| || || || |||||||||||| Sbjct 871440 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTG 871381 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 871380 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATG 871321 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || || || ||||||||| Sbjct 871320 GTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 871285 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || || || || || || ||||| ||| || ||||| Sbjct 871956 CGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCG 871897 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | ||||||||| || || || || |||||| Sbjct 871896 TCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTG 871837 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| ||||| | ||| | Sbjct 871836 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATG 871777 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||||||||||||| Sbjct 871776 GTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATG 871741 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || ||||| || || || ||||| ||| || ||||| Sbjct 871728 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCG 871669 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| |||||| | |||||| || || || |||||||||||| Sbjct 871668 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTG 871609 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | || ||||| | ||| | Sbjct 871608 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATG 871549 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || || |||| || || ||||| ||||||||| Sbjct 871548 GTCTTACCTGTCAAGGTCTTGACAAAGATCTGCATG 871513 >seq112 Length=2547449 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || |||||||| || || |||||||| || |||||| | Sbjct 1632804 CGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCA 1632863 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| ||||||| | |||||| || ||||| |||||||| ||| Sbjct 1632864 TCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTG 1632923 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | ||||| | ||| || || | ||| | Sbjct 1632924 TCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATG 1632983 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| |||| || || || |||||||||||| Sbjct 1632984 GTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCATG 1633019 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | ||||||||||| || || ||||| || || ||||| | Sbjct 1633260 CGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 1633319 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || ||||| |||||| Sbjct 1633320 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 1633379 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | ||| || | ||| || || | ||| | Sbjct 1633380 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 1633439 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 1633440 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475381395805360