Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq432 141 9e-29 seq112 134 1e-26 seq452 89.7 5e-13 seq157 86.0 6e-12 >seq432 Length=995019 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || | || ||||| ||||||||| | || |||||| ||| Sbjct 871969 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 872028 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 872029 TGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCA 872088 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 872089 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAA 872148 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| || | || |||||| | |||||||| |||| || || Sbjct 872149 CATCCAAAAAGAGTCAACCCTGCATCTCGTGCTGCGCCTGAGGGGTGG 872196 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| ||||||||| | || || || | Sbjct 871282 AAACATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAACC 871341 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| ||||| |||||| | || Sbjct 871342 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 871401 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || |||||||||||||| |||| |||||||| ||||| Sbjct 871402 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCTGACTA 871461 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || || | || |||||| | |||||||| |||| || ||| Sbjct 871462 CAACATCCAGAAAGAGTCTACCCTGCATCTCGTGCTGCGCCTGAGGGGGGGC 871513 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 871742 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 871801 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | || || Sbjct 871802 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGATCAG 871861 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 871862 CAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCCGACTACAAC 871921 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || || ||| | |||||||| | |||||||| Sbjct 871922 ATCCAGAAGGAATCCACTCTCCATCTCGTGCTGCGCCTCAGAGGCGG 871968 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || ||||||||| | || || || ||| Sbjct 871514 ATGCAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAACCCAGT 871573 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 871574 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 871633 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || |||||||||||||| |||| |||||||| |||||||||| Sbjct 871634 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 871693 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| ||||||||||| | || |||||| Sbjct 871694 ATCCAGAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCAGGGGCGGC 871741 >seq112 Length=2547449 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| | Sbjct 1632790 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1632731 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || || ||| | ||||| Sbjct 1632730 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 1632672 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||| ||||| Sbjct 1632671 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGATTACAA 1632612 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCG 38473 |||||| |||||| | || || || | |||||||| |||| || ||||| Sbjct 1632611 CATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGCCG 1632561 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1633702 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1633643 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| ||||| | ||||| Sbjct 1633642 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 1633583 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| |||||||| || | |||||||| || |||||| Sbjct 1633582 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAAC 1633523 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || |||||| | |||||||| ||||||| ||| Sbjct 1633522 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 1633475 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 1633933 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 1633874 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||| | | | | |||| | || | || |||| ||||| || || ||||| |||| Sbjct 1633873 AGCGATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCCGA 1633815 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| ||||| || |||| ||||||||| ||||| Sbjct 1633814 CCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCTGACTA 1633755 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| |||||| | || || || | || ||||| ||||||| ||| Sbjct 1633754 CAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTGCGCCTGAGAGGTGGC 1633703 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 1633246 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1633187 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || |||||| | ||||| Sbjct 1633186 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 1633127 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| ||||| || || | ||||||||| ||| |||||| Sbjct 1633126 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGATTACAAC 1633067 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || || || |||||||||| |||| || ||| Sbjct 1633066 ATCCAGAAGGAATCCACCCTCCACCTGGTGCTGCGCCTGAGGGGTGGC 1633019 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 1633474 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 1633415 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || || |||||| | ||||| Sbjct 1633414 GATACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1633356 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| |||||||| Sbjct 1633355 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 1633296 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || | |||||||| ||||||| ||| Sbjct 1633295 CATCCAGAAAGAGTCTACTCTTCACCTTGTGCTGCGCCTGAGAGGTGGC 1633247 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| ||| Sbjct 1633018 ATGCAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1632959 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||||||||| ||||| | ||||| Sbjct 1632958 GACACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAG 1632899 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||| |||||||| || | |||||||| || |||||| Sbjct 1632898 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAAC 1632839 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || |||||| | |||||||| ||||||| ||| Sbjct 1632838 ATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGC 1632791 >seq452 Length=654506 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || ||||||||||| || |||||||| ||| ||||| Sbjct 328789 CACCTCCTCCGCCGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 328730 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || || ||||| || | || || ||||||||||| || |||| ||||||||| Sbjct 328729 GTACTGGATGGGGAACACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 328676 >seq157 Length=1983938 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| ||||||| |||||||| || | ||||||||| |||||||| || | ||| Sbjct 100816 GGGATCCCCCCCGACCAGCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 100875 Query 38406 ACCCTCAACGACTACAACATCCA-AAAGG 38433 || ||| ||||||||||||||| ||||| Sbjct 100876 ACGCTCGCCGACTACAACATCCAGAAAGG 100904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500047200357760