Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq195 93.3 3e-13 seq442 89.7 4e-12 seq174 89.7 4e-12 >seq195 Length=1814064 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 315372 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATAAATAAAGCAGATATCCGGATGGTTAT 315431 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 315432 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 315491 Query 367113 TGATGG 367118 ||||| Sbjct 315492 CGATGG 315497 >seq442 Length=648746 Score = 89.7 bits (98), Expect = 4e-12 Identities = 313/480 (65%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || || |||||||||||||| | || || || || || || || |||||||| | Sbjct 190633 ACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGGACCCCACGG 190692 Query 517325 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 517384 | || || ||||| ||| || || ||| | ||||| || || || || || | Sbjct 190693 GGCGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTGGTCATG 190752 Query 517385 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 517442 | ||||||||| | | |||| || | ||| | | || || ||||| || || | Sbjct 190753 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGTAGGTGG 190810 Query 517443 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 | || |||| ||| ||| ||||| || ||||| | | || | |||||| Sbjct 190811 TGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGGCGGTCATC 190869 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | || || ||||| || | || || || || || |||||||| | |||| | || Sbjct 190870 ACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGAGCAGATCC 190929 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 || | || || | | || | || ||||| ||||| | || ||||| || ||| Sbjct 190930 TGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCACCGTAAGCA 190989 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||| ||||||||||| | | | || || | ||| |||||||| || | || Sbjct 190990 ACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGT 191049 Query 517682 AGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 |||| ||| | ||| || ||||| | || |||||||| | || || || || | ||| Sbjct 191050 AGTT-TCTGGATCTTGGGGATACGGGTGGAGCCTCCAACCAGCACGATCTCCTGGATCTG 191108 >seq174 Length=2103569 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 518531 GTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTC 518590 || ||||||||||| |||||| |||||| || || ||||| ||||||| ||||| Sbjct 1764796 GTGTTGGTTGGATTCATTGCAACTTGATTCTTTGCAGCATCGCCAATCAACCTCTCTGTG 1764855 Query 518591 TCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCA 518650 ||||| || | ||||| || || || || || || || ||||| ||||| || || Sbjct 1764856 TCTGTGAAGGCGACATAGCTCGGCGTGGTCCGGTTCCCCTGGTCATTGGCAATGATCTCC 1764915 Query 518651 ACTTTACCATTTTGCCATACACCTACACA 518679 || || |||| ||| | ||||| ||||| Sbjct 1764916 ACCTTCCCATGTTGGAACACACCAACACA 1764944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779825517646834