Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq442 269 3e-67 >seq442 Length=648746 Score = 269 bits (298), Expect = 3e-67 Identities = 1028/1599 (64%), Gaps = 36/1599 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 ||| || || |||| || || || || ||||| ||||| |||||||| || || Sbjct 190506 TTCGTCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTTGCT 190565 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| || || || || || ||||| | ||||||| | ||| ||| | Sbjct 190566 GAGGCGACCCTTGTCGTTGGTGATGGTTATCTTGTTCTCCTTACCCGTGCTCTTGTCTAC 190625 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| |||||||| ||||| | ||||| | || | || || || Sbjct 190626 CGCGCTGACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGG-- 190683 Query 6748 ACCCCTCGGTGCG--GCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCC 6805 ||||| ||| ||| | || || || || | |||||| | || || || |||| ||| Sbjct 190684 ACCCCACGGGGCGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCC 190743 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTT 6863 | | | | | ||||| || || || | | | ||| || || || ||| Sbjct 190744 TTGGTCATGGCCCTCTCACCCTCGTACACCTGGACCAGGACACTGCTC--TGGTTGTCTG 190801 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 || | |||| | || || || | ||||| || || || | | || | | Sbjct 190802 AGTAGGTGGTGAAGGTCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGG 190861 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 |||||| | || || || |||| || || ||||| || || || |||| || | Sbjct 190862 CGGTCATCACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGA 190921 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 ||| || || || ||| | || ||| | | ||| || ||||| || | ||| | Sbjct 190922 GCAGATCCTGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCAC 190981 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 |||| || || |||||||| || || || | || || || ||||| || || || | | Sbjct 190982 CGTAAGCAACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGT 191041 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || || | || || || || ||||| || || || || || |||| ||||| || | Sbjct 191042 CCTGTAGTAGTTTCTGGATCTTGGGGATACGGGTGGAGCCTCCAACCAGCACGATCTCCT 191101 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | | || || | ||| | || || || | ||||| || || |||| Sbjct 191102 GGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGGGCCTTTTCTACGGGCTCCAGGGTGC 191161 Query 7224 TACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAAT 7283 |||||| | ||| | || |||||||| || ||||| |||||||| || ||||| | Sbjct 191162 CACGGAAGAGGTCGGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAAGTGTAGAAGT 191221 Query 7284 CAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACG 7340 ||| ||| ||||| | || || || |||||| | | ||| ||| ||||| | | Sbjct 191222 CAATGCCCTCGTACAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCTGAGAG 191278 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | ||||| || | ||| || ||||| || | || | | || ||| || || | || Sbjct 191279 TGCGCTTCGCCCTCTCGCAAGCCGTACGCAGTCGCCTCACCGCGCGCTTATTGCCAGCAA 191338 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 | || ||| || ||||| || || ||||| ||||| | | | || | Sbjct 191339 TGTCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAA 191398 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 | || || || |||| ||| || ||||| || || | || || |||||||| || | | Sbjct 191399 AGTCCTCCCCCCCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCCATCCT 191458 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| | | | ||||||||||| || || || |||| |||||| ||||| |||||| Sbjct 191459 CAATGGTAAGGATGGAAACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTTCT 191518 Query 7581 TATCGTC-GTCTTTG-----TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | | | | ||||| || | ||||| || || || || || || || | Sbjct 191519 TCTCACCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCTATCGCAGCTGCTGTGGGCT 191578 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | || |||||||| | ||||||||| | || || | |||||||| || || || | Sbjct 191579 CGTTGATAATACGCATCACGTTCAGGCCGGTGATGGTGCCAGCATCTTTGGTGGCCTGGC 191638 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || || || ||||| || || ||||| | ||| |||| | || || || | Sbjct 191639 GCTGGGAGTCATTGAAGTAAGCAGGCACCGTGATGACAGCGTTCTGCACCTTGCGCCCCA 191698 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 |||| | || || || || ||||| |||||||| ||||| || ||||| || | | Sbjct 191699 GATAGGCCTCGGCAATCTCCTTCATCTTGGTAAGCACCATGGAGCTGATCTCCTC-GGGG 191757 Query 7815 CAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | | || ||| | || || || | || || | | | |||| || || |||| Sbjct 191758 AAGAAGGTCTTCATCTCGCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCC 191811 Query 7874 GGGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | ||| | | ||| | ||||| || || || |||| || Sbjct 191812 TCGTTCACCACGCGGAAGGGCCAGTGCTTCATGTCCGACTGCACGGTGGGGTCATCGTAC 191871 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| || ||||| ||||| || | ||||| |||||||||| || ||| Sbjct 191872 TTGCGGCCGATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATCGCCACCTGG 191931 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || ||||| ||||| || || || || || || || || ||||| | |||| Sbjct 191932 TTCTTGGCGGCGTCGCCGATGAGCCGCTCGGTA---TCGGTGAAGGCCACGTA-GCTGGG 191987 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || || || |||||||| || || || || || | | | || ||||||| Sbjct 191988 CGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACGCC 192047 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||||| ||||| || || | || || ||||| || Sbjct 192048 CACGCACGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 192086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634973310214760