Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq112 143 6e-29 seq432 138 3e-27 >seq112 Length=2547449 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||||||||| |||||||| || || ||||| || | || || Sbjct 1633253 TCTCAGGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGT 1633312 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||| |||||||| ||||| ||||| || | || ||||| || |||||||| Sbjct 1633313 GCGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 1633372 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||| |||||||||||||| || || || ||||| Sbjct 1633373 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAG 1633432 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || || || | ||||| Sbjct 1633433 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633474 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||||||||| || || |||||||| | || || Sbjct 1632797 TCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGT 1632856 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | | || ||||| ||||||||||| Sbjct 1632857 GCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCC 1632916 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || ||| || |||||||| ||||| ||| || || || Sbjct 1632917 CTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTGTC---ACTGGGCTCAACCTC 1632973 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || ||||| || || ||||| | ||||| Sbjct 1632974 AAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 1633018 Score = 136 bits (150), Expect = 9e-27 Identities = 166/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||||||||| || || |||||||| | || || Sbjct 1633481 TCTCAGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGT 1633540 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| || |||||||| | | || ||||| ||||||||||| Sbjct 1633541 GCGACCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCC 1633600 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||||| || || || ||| || |||||||||||||| ||| || || || Sbjct 1633601 CTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTC 1633657 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || |||| || || ||||| | ||||| Sbjct 1633658 AAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1633702 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| || || || || |||||||||| || || | ||||||||| Sbjct 1633038 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCTTCA 1633097 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || ||||||||||| ||||| || Sbjct 1633098 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGG 1633157 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || ||||| |||||||| ||| || || |||||||| | ||| Sbjct 1633158 ATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTC 1633214 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || || || | ||||| Sbjct 1633215 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || |||||||| || ||||| || || || || ||||| || | || || Sbjct 1633709 TCTCAGGCGCAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 1633768 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| ||||| ||||| || | || ||||| ||||||||||| Sbjct 1633769 GCGCCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCC 1633828 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||| |||||||||||||| || || || ||||| Sbjct 1633829 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAG 1633888 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || || || | ||||| Sbjct 1633889 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633930 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| || || || || |||||||||| || || | |||||||| Sbjct 1632582 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCTTCC 1632641 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| || || |||||||| ||||| || Sbjct 1632642 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 1632701 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||||||||| || || || || ||||| | ||||| Sbjct 1632702 ATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGTCTTG 1632761 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 1632762 CCAGTCAGGGTCTTCACGAAGATCTGCAT 1632790 >seq432 Length=995019 Score = 138 bits (152), Expect = 3e-27 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||||||||| || ||||| |||| || || | ||||||||| Sbjct 872178 ACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 872119 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || |||||||| |||||||| || ||||| || Sbjct 872118 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 872059 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| || || || | ||| | ||| Sbjct 872058 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCCAAGGTGATGGTC 872002 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| || || || || | |||||| Sbjct 872001 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 871969 Score = 131 bits (144), Expect = 4e-25 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || | ||| ||||||||||| || || || ||||| |||| || || Sbjct 871734 CTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 871675 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | || ||||| ||||| || || || ||||| || | || ||||| || |||||||| Sbjct 871674 CGTCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCC 871615 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || |||||| |||||||||||||| ||| ||| ||||| Sbjct 871614 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGTTCAACTTCC 871558 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| | ||||| |||||||| || || || || | ||||| Sbjct 871557 AAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 871514 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || || || |||||||| || || || || ||||| |||| || || Sbjct 871963 TCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGT 871904 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||| ||||| |||||||| || |||||||| || | || || ||||| ||||| || Sbjct 871903 GCGCCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACC 871844 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 ||| ||||| || || || |||||| |||||||||||||| ||| || ||||| Sbjct 871843 TTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCAACTTC 871787 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| | ||||| || |||| || || || || | ||||| Sbjct 871786 CAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 871742 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || |||||||| || || ||||| || | || || | || ||||| Sbjct 871494 ACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 871435 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || |||||||| || ||||| || Sbjct 871434 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 871375 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| |||||||||||||| ||| ||| ||||| | ||| | ||| Sbjct 871374 ATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGTTCAACTTCCAAGGTGATGGTC 871318 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 871317 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 871286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109196030184263