Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq432 111 1e-19 seq112 107 1e-18 >seq432 Length=995019 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||||||| | ||| || ||||| ||||| ||||| || Sbjct 871740 CCGCCCCTGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 871681 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| | || ||||||||||| || ||||| || || | |||||||| | || Sbjct 871680 AGGGTGCGTCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGA 871621 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| ||||| || || || | |||| || |||| Sbjct 871620 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGTTCAA 871563 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || | ||||| |||||||||||||| Sbjct 871562 CTTCCAAGGTGATGGTCTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 871514 Score = 109 bits (120), Expect = 4e-19 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | ||| | || ||||||||||| || ||||| Sbjct 871476 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGTTTGCCAGCAAAG 871417 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||| || Sbjct 871416 ATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 871359 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||||| || | ||| ||||| || || || || ||||| | Sbjct 871358 TCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTGA 871299 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 871298 CGAAGATCTGCATGTT 871283 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 872160 TCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAG 872101 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 872100 ATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--AT 872043 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||| || || | ||| ||||| || || || | ||||| | Sbjct 872042 TCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGA 871983 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 871982 CAAAGATCTGCAT 871970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || || ||||| || || || || Sbjct 871933 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAA 871874 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| ||| | || | || |||||||| ||||| ||||| | Sbjct 871873 GATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTGAC--A 871816 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | ||| ||||| || || || || |||||| Sbjct 871815 TTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTC 871756 Query 34968 ACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 871755 ACAAAAATCTGCAT 871742 >seq112 Length=2547449 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || || | ||| | ||| ||| ||||| ||||| || || || Sbjct 1632564 CCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 1632623 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 1632624 AGGGTGCGTCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 1632683 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| ||||| || ||| | || | || | || |||||| Sbjct 1632684 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACC 1632743 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 1632744 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1632790 Score = 105 bits (116), Expect = 4e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | ||| ||| ||||| ||||| || || || Sbjct 1633020 CCACCCCTCAGGCGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGAC 1633079 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || ||||| || || ||||| || || | |||||||| | || Sbjct 1633080 AGGGTGCGCCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 1633139 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| || || || || || | |||| || ||||| Sbjct 1633140 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCAA 1633197 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || |||||||||||||||||||| Sbjct 1633198 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1633284 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAAG 1633343 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || |||||||| ||||| || ||| Sbjct 1633344 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1633403 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || |||||| || | ||| ||||| || || || || ||||||||| Sbjct 1633404 TCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1633463 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1633464 AAGATCTGCAT 1633474 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || || ||||| || || ||||| Sbjct 1633739 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCTGCAAA 1633798 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| || ||| Sbjct 1633799 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1633858 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | || |||||| || | ||| ||||| || || || || |||||||| Sbjct 1633859 CTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1633918 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 1633919 AAAGATCTGCATGTT 1633933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || || ||| | || |||| |||||||| || || || || Sbjct 1633512 TCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAAG 1633571 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | || | ||||| ||||| ||||| || || || Sbjct 1633572 ATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCAC--AT 1633629 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || || || ||||||| Sbjct 1633630 TCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 1633689 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 1633690 CGAAGATCTGCAT 1633702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324554118433992