Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq452 114 1e-20 seq629 96.9 4e-15 seq534 96.9 4e-15 >seq452 Length=654506 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| ||| || | ||| |||||||| || | || ||||| | ||||||||| | Sbjct 331776 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 331717 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || |||||||| || ||||||||||| || ||||| || |||||||||| Sbjct 331716 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 331657 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 331656 CTACTACACGTTCTCC 331641 >seq629 Length=368953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 ||||| | | |||||| | ||| ||||| | |||||||| || |||||||| || ||| Sbjct 325331 GTATACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGA 325390 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || | ||| || | ||||||||| ||||| ||||||||||||| ||| |||| Sbjct 325391 TTGCTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTTCCAGTCTCTGTCTGG 325450 Query 48042 GATTCAATGAT 48052 ||||| ||||| Sbjct 325451 GATTCGATGAT 325461 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || || | || || | ||||||| ||| ||||| | Sbjct 318468 TCCACCCATAGAAATGCATGCTGGTCAGCTTGCCGTAGTTGGGTTCTGCAATGTGAATGT 318527 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| || ||||||||||| || || ||||| || |||||||| | | ||| Sbjct 318528 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 318587 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | |||||||| || || ||||| | ||| || | ||| || || Sbjct 318588 TCTGGGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAGGTCATCAGG 318636 >seq534 Length=463462 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | ||||||||||| || || || | Sbjct 279467 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 279408 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || |||| |||||| || || || ||||| || ||||| ||||| ||||| | Sbjct 279407 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 279348 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 279347 CAACGACTCTCTCACC 279332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561967647453960