Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq432 89.7 3e-12 seq174 86.0 4e-11 >seq432 Length=995019 Score = 89.7 bits (98), Expect = 3e-12 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 |||||||| ||||| ||||| || || || | || ||||| || ||||| ||||||||| Sbjct 871896 TCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTG 871837 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAAT 480736 || || ||||| |||||| ||||| || ||| || | | || || ||| ||| || Sbjct 871836 TCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAA-GGTGAT 871778 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || ||||| || Sbjct 871777 GGTCTTGCCAGTCAGGGTCTTCACAAAAATCTG 871745 >seq174 Length=2103569 Score = 86.0 bits (94), Expect = 4e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||| ||||| Sbjct 1762352 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGATGCC 1762293 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 || || || || || || ||||| ||||| Sbjct 1762292 AACGGCATCCTGAACGTGTCTGCTGTGGATAA 1762261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267317485318172