Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2 253 2e-62 seq30 154 2e-32 >seq2 Length=12866156 Score = 253 bits (280), Expect = 2e-62 Identities = 605/909 (67%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||| | || ||| |||| ||||| || || || |||||| || || || | Sbjct 10706090 TGTGTCGTAAATATTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTATCAAACT 10706031 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||| | || ||||| |||||||| Sbjct 10706030 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCATTTCAGATCTCCTACCCCGAACA 10705974 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || ||| |||| || ||||| | || ||||| | ||| | Sbjct 10705973 CACAGACAGACCGAACATGAACTCCGCTGCATGGTGGGTAAGGTGCACCTTTAGACACAT 10705914 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | ||| ||||| |||| Sbjct 10705913 CTCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATATCGGAAACATCGT 10705854 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| |||||||| || | || || | ||| | || |||||| Sbjct 10705853 ACTTGT-CACTAGAAGAAACAGCACCGGGGACTTCAGGGATTCTCTGAATCGTTGCCCAC 10705795 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| ||| || |||||||| || || || | ||| || || || | |||| ||| Sbjct 10705794 AGGTATTCATCAGGGCTGTAAGTATCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTG 10705735 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || || | |||| | || ||||| || || || || || || Sbjct 10705734 CTTTCTAATATATGTTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 10705675 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| ||| | |||||| ||| ||||| ||| || | Sbjct 10705674 ATTGGAGTACTGAGAGGTGGCAGTTGTTTGTCTATACCTGTGTTCTTTACCTTACCATCA 10705615 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | | | || |||||||| || || | ||||| ||| ||||| Sbjct 10705614 ATAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTCTCC 10705555 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||||| | || || || || |||| ||||| | Sbjct 10705554 AAGCTGTTTTCACCTTTAAGGGCTTTCAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 10705495 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 || ||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 10705494 GGGAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 10705435 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||||||||||||||||||||| | |||||| ||||| || || || ||||| Sbjct 10705434 TCTTTCATGCAATTAATATCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 10705375 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 || | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 10705374 AGCTGGCTGGAAATAAAGACATTATCAAAACATGAAACTATTCCCTTCACAG-CAGTAAA 10705316 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || || | | ||||| ||| || || | ||| || | |||||||| || ||||| Sbjct 10705315 AAAGGATTCTGGAGACTTTCTGTCTACATGAATGCAGTAAAAATTCTGAGGAGCATAGAT 10705256 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 10705255 AGATCTTAGAAGTCTATCAAGCATCTCGATTTTGTGATAAACCACTATTGAGTAAGCAAT 10705196 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 10705195 TGGAAATTC 10705187 >seq30 Length=4989583 Score = 154 bits (170), Expect = 2e-32 Identities = 606/938 (65%), Gaps = 30/938 (3%) Strand=Plus/Minus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || || || |||| |||| |||| || | |||||| Sbjct 2268117 CTGTGGCGCAGGTGCTCCTCGAGGCACTGGATGGCGGCATCGTCCACCTGGGGGTCGAAC 2268058 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | | | || |||||| ||| ||| |||| |||| | Sbjct 2268057 TTGTTGGCCAAGAGGTGGTGC---TGCCGCAGCATCCAGGGCAGGTCCCCGGCCCCGTAG 2268001 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || || |||| |||| |||||||| | ||||| || | Sbjct 2268000 ATGCAGACGGCGCGCTGGTAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCCTTGCTGGTG 2267941 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| ||| Sbjct 2267940 TCGCCCTCCAGGTACTGCCACTTGACCAGGCGGGGCAGGGCGTTCATGTCCGAGAGCTCG 2267881 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| | |||| | ||| || || |||||||||| || ||||||||||| Sbjct 2267880 AACTTGTCGTTGTGGGGCAGGGCGCCCGGCACGCCGGGCACGCGGGTGAGGGTGGCCCAG 2267821 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CT 160402 | ||| |||||||||||||| |||||||| | ||| || | |||| | | | | Sbjct 2267820 ACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAAC-CGCAGCGCCGCGGG 2267762 Query 160403 GTCC-CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGA 160461 |||| || || | ||| ||| ||| | ||||| | | |||||||||||| | || Sbjct 2267761 GTCCTCGAAG-ATGTGCTGCACGAAGGCCCGCGTCACCGCCACGTACGCGCTGCCCGTGA 2267703 Query 160462 ATATCGGTATGGGTATAGGCGGCGTGTCTTTGTC-CTGACCG-GTGTTAGACACCACTCC 160519 | || || | | |||| || | || || || | | || ||| | ||| Sbjct 2267702 ACATGGGCGAGCTGAGTGGCGACGGCTGCTTCTCGGTGGCTGTCTGCGAGATGGC-CTC- 2267645 Query 160520 TTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT---GCGGTGGCATGCGTTC 160576 | ||| |||| | | |||||| | | | ||||| || |||| | || Sbjct 2267644 ---CCCCACTTCGTGGTGGTACTTCCAGCGCAGCTGCTTGTAGGACGATGGCTT---CTC 2267591 Query 160577 CGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGT 160636 | ||| | ||||| || | ||| | || ||| ||||| ||| || Sbjct 2267590 GGACTCCATGCTGTTCTGCCCCTGCAGCAGCTGGAGGGCGCGGACCATCTCCGCGTTGGT 2267531 Query 160637 CTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAG 160693 |||| || |||||||| ||||| ||| | || || |||| | | |||| Sbjct 2267530 TTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACATAGCGCCATGGCACAGGGCTC-- 2267473 Query 160694 GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACAC 160753 | |||||||| |||||| || | || ||||||| ||| |||||| || || || Sbjct 2267472 -TGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGCGTGACCAGGAGGCATAGAC 2267414 Query 160754 TACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCAC 160813 || |||| || ||||||||||||||||| ||| || | |||| || ||| Sbjct 2267413 CACCCTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGCAGGCGGCGATGGCCCTCAC 2267354 Query 160814 CGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGA 160871 ||| ||| | || | ||| | ||| ||||| | ||| || | |||||| Sbjct 2267353 GGCCTCCTGGAAGGCGGCT--GGGGACTTGCTGTCTACGTGGATGCAGTAGACGTTCTGT 2267296 Query 160872 GGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATA 160931 ||| |||||||| || || | || |||||||||||| || || | ||||| || || Sbjct 2267295 GGCATGTAGATGGACCGCAGGAGCCGCTCGAACATCTCGATTTTGTTGTGGATGACTATG 2267236 Query 160932 GAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 |||||||| || || ||| | | |||||| |||||| Sbjct 2267235 GAGTAGGCAATGGGGAACGCAGCCTCCTCCTCACTCAG 2267198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577074253043640