Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq195 96.9 3e-14 seq442 89.7 4e-12 >seq195 Length=1814064 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 315372 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATAAATAAAGCAGATATCCGGATGGTTAT 315431 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 315432 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 315491 Query 131296 TGATGG 131301 ||||| Sbjct 315492 CGATGG 315497 >seq442 Length=648746 Score = 89.7 bits (98), Expect = 4e-12 Identities = 313/480 (65%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 || || || |||||||||||||| | || || || || || || || |||||||| | Sbjct 190633 ACGTTCAGGATACCATTGGCATCTATGTCGAAAGTAACCTCGATCTGGGGGACCCCACGG 190692 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || || ||||| ||| || || ||| | ||||| || || || || || | Sbjct 190693 GGCGCTGGGGGGATGCCTGTCAGATCAAACTTGCCCAGCAAGTTGTTGTCCTTGGTCATG 190752 Query 281552 TTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGAATAAGTTG 281609 | ||||||||| | | |||| || | ||| | | || || ||||| || || | Sbjct 190753 GCCCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGAGTAGGTGG 190810 Query 281610 TAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 281668 | || |||| ||| ||| ||||| || ||||| | | || | |||||| Sbjct 190811 TGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGGGCGGTCATC 190869 Query 281669 ATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 281728 | || || ||||| || | || || || || || |||||||| | |||| | || Sbjct 190870 ACCCCGCCGGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAGCAGGAGCAGATCC 190929 Query 281729 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 281788 || | || || | | || | || ||||| ||||| | || ||||| || ||| Sbjct 190930 TGCACGTTCTCGGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCCGCACCGTAAGCA 190989 Query 281789 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 281848 ||||| ||||||||||| | | | || || | ||| |||||||| || | || Sbjct 190990 ACAGCCTCATCAGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCCTGTAGT 191049 Query 281849 AGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 281907 |||| ||| | ||| || ||||| | || |||||||| | || || || || | ||| Sbjct 191050 AGTT-TCTGGATCTTGGGGATACGGGTGGAGCCTCCAACCAGCACGATCTCCTGGATCTG 191108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739644114996114