Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq112 149 6e-31 seq432 136 4e-27 seq629 95.1 1e-14 seq157 84.2 2e-11 >seq112 Length=2547449 Score = 149 bits (164), Expect = 6e-31 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || |||||||| || ||| ||| | ||||| |||| Sbjct 1632815 ATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCA-TCCTCCAGCT 1632873 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | || ||||||||| ||||| ||||| || ||||| ||||| Sbjct 1632874 GCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCT 1632933 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 1632934 TGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAG 1632993 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||||||||||||| Sbjct 1632994 TCAAGGTCTTCACGAAAATCTGCATG 1633019 Score = 149 bits (164), Expect = 6e-31 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || |||||||| || ||| ||| | ||||| |||| Sbjct 1633499 ATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCA-TCCTCCAGCT 1633557 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | || ||||||||| ||||| ||||| || ||||| ||||| Sbjct 1633558 GCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCT 1633617 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 1633618 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAG 1633677 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || ||||| ||||||||| Sbjct 1633678 TCAGGGTCTTCACGAAGATCTGCATG 1633703 Score = 147 bits (162), Expect = 2e-30 Identities = 154/200 (77%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||||||| || ||| | | | || || |||||||||| Sbjct 1632593 GGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 1632651 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || ||||||||||||||||| |||||| || Sbjct 1632652 CTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 1632711 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| || ||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 1632712 TCACGTTCTCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 1632771 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 1632772 TCTTCACGAAGATCTGCATG 1632791 Score = 138 bits (152), Expect = 1e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 1633733 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCC 1633792 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||||||||| |||||||||||||| |||||| ||| Sbjct 1633793 TGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1633852 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || ||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1633853 CACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 1633912 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 1633913 CTTCACAAAGATCTGCATG 1633931 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||||||| || ||| | || || ||||||||||| Sbjct 1633049 GGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCC 1633108 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 1633109 TGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1633168 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1633169 CACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 1633228 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 1633229 CTTCACAAAGATCTGCATG 1633247 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| || ||||| || || ||| | || || ||||||||||| Sbjct 1633278 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 1633337 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| ||||||||| || || |||||||||||||| |||||| ||| Sbjct 1633338 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1633397 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| || ||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1633398 ACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1633457 Query 133644 TTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 1633458 TTCACAAAGATCTGCATG 1633475 >seq432 Length=995019 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||| || ||||| ||| || ||| | ||| || ||||||||||| Sbjct 871938 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCA 871879 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || |||| |||||| || || || || ||||||||||| |||||| |||| Sbjct 871878 GCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTG 871819 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 871818 ACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTCTTGCCAGTCAGGGTC 871759 Query 133644 TTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 871758 TTCACAAAAATCTGCATG 871741 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||||||||| || ||||| || || ||| ||| || ||||| Sbjct 871489 ATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTG 871430 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||||| || | || |||| ||||||||| || || ||||| |||||||| |||||| Sbjct 871429 TTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 871370 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| |||| || || || | ||||| ||| ||||| || Sbjct 871369 GGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTGCCAGT 871310 Query 133637 CAGAGTTTTTACGAAAATCTGCATG 133661 ||| || || ||||| ||||||||| Sbjct 871309 CAGGGTCTTGACGAAGATCTGCATG 871285 Score = 125 bits (138), Expect = 7e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| |||||||| || || ||||| ||| || ||| | || || ||||| Sbjct 872173 ATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTG 872114 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || |||| ||||||||| || || ||||| |||||||| |||||| Sbjct 872113 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 872054 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 ||||| | ||||| ||||| ||||||| || || | ||||| ||| ||||| || Sbjct 872053 GGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGT 871994 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 871993 CAAGGTCTTGACAAAGATCTGCAT 871970 >seq629 Length=368953 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| |||| |||| |||||| Sbjct 325334 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAATTCTGCTGATTG 325393 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | |||||||||||||||||| ||| ||||| || Sbjct 325394 CTCTTCCGGTTGCAAGAGTCCTTGTACAGCATGTAAGGTGTTCCAGTCTC 325443 >seq157 Length=1983938 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || ||||| ||| | | |||| | | | ||||| ||||||||||||||| | Sbjct 100903 CTTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCA-TCCTCCAGCTGCTTGCCCGCGAAG 100845 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 || ||||||||||||||||| ||||| ||| Sbjct 100844 ATCAGCCGCTGCTGGTCGGGGGGGATCCCT 100815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483299406994360