Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq70 122 1e-22 seq30 118 1e-21 >seq70 Length=4440366 Score = 122 bits (134), Expect = 1e-22 Identities = 458/704 (65%), Gaps = 17/704 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| ||| || | |||| Sbjct 533341 GCCAGCTCTCTTGGGGAGAGAAAATCTTCCACGTGTATGAAAGAATCTGATGGAATGTAA 533400 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||| | Sbjct 533401 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGGGCA 533460 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || |||||||| || |||| | || || ||||| | || |||||| Sbjct 533461 TTGTAAAGTTTCTCAGTAATATAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 533520 Query 177126 TTACAGGAAGATAGTAG-CGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 ||||| | ||| | ||| || || |||| | ||| | || ||||| | | | Sbjct 533521 TTACAAGTAGAGA-TAGTTGGAATTAAGTTTTTATCATTGACGTAGTCTCCGAAGGCTTG 533579 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || |||| ||| || ||||| ||| || || || || | | Sbjct 533580 CCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCAT 533638 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || ||||| || || || ||||| || || || || ||||| | || || Sbjct 533639 GCTCAGGATTCCAGTTACTTACAACCCAACACACCAAGTT-TTCTTTACTTGGCAC---- 533693 Query 177303 TTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| ||| ||| | | | | | | | | | | ||||| ||||| |||||||| | Sbjct 533694 TTC-ATATGTAAAGGAACTTGTACCAACCATCATGAAGCCATAAGGCACCTGAATATCTG 533752 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 | || || | || || | || || || ||||||| ||| || | || ||||| | | Sbjct 533753 AATCACGCCGATAAGTCAGGGTCAGGTTAAAAAGGTGTTCAATGCCACTCTTTTGAGGAG 533812 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 ||| | || || || ||||||||||| ||||| || || || | ||| |||| || Sbjct 533813 TATGT--GTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 533870 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| || || || ||||| |||| || || || | || Sbjct 533871 CTGAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACTGCGTGGGA 533930 Query 177539 TTTGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCT 177598 ||||| ||| | || | ||| | || | || ||| || | ||||| || | | Sbjct 533931 TTTGTTATATAGTGAGCGGTCAATAGTCAGATGGCACCCATGGATGTTGAACATTGTTTG 533990 Query 177599 ACACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 || | |||||||||||| || || | ||||| ||||| Sbjct 533991 GCAGGATGTTAGATCAAATGTCTGACCAAATGGCCAAACCCAGA 534034 >seq30 Length=4989583 Score = 118 bits (130), Expect = 1e-21 Identities = 238/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Minus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| ||||| || | ||| ||||||||||||||| || | ||||| Sbjct 2267550 CGGACCATCTCCGCGTTGGTTTTGATGGGGAAGTCGGTGCCGCAGGTGTTGAGGACATAG 2267491 Query 162700 TTCCACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGC 162757 ||| | | | | | || | | ||| ||||| | ||||| || || ||||| | || Sbjct 2267490 CGCCA--TGGCACAGGGCTCTGCAGCAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGGC 2267433 Query 162758 GACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAAC 162817 | ||| || || || || || ||||||| | |||| |||||||| ||| ||| | Sbjct 2267432 GTGACCAGGAGGCATAGACCACCCTCTCCAGGCGGCTGGCCACAAAGACGTTGGGGAAGC 2267373 Query 162818 ACGAAACTATCCCCATCACGGCCAGTGAGAACATCGGGT-CCGCTTTCCTATCTACGTGT 162876 | | | || || |||||||| ||| ||| | | || || |||||||| Sbjct 2267372 AGGCGGCGATGGCCCTCACGGCCTCCTGGAA-GGCGGCTGGGGACTTGCTGTCTACGTGG 2267314 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 | |||||| | ||||| || |||||||| || ||| | | |||||||||||| || Sbjct 2267313 ATGCAGTAGACGTTCTGTGGCATGTAGATGGACCGCAGGAGCCGCTCGAACATCTCGATT 2267254 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || | ||| | || || || || || ||||||||| |||||||||| Sbjct 2267253 TTGTTGTGGATGACTATGGAGTAGGCAATGGGGAACGCAGCCTCCTC 2267207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578286748494400