Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq432 141 8e-29 seq112 129 5e-25 >seq432 Length=995019 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || |||||| || | || |||||| || |||||||| |||| || ||| || |||| Sbjct 871726 CAGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 871667 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || || ||||| |||| || ||||||||||| |||| || ||||||||| Sbjct 871666 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 871607 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | | ||||| || | ||| || |||| ||||| || Sbjct 871606 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGT 871547 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || ||||| |||||||| Sbjct 871546 CTTACCTGTCAAGGTCTTGACAAAGATCTGCAT 871514 Score = 138 bits (152), Expect = 1e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| ||||| |||||||| |||| || ||| ||| | || ||||||||||| || ||||| Sbjct 872161 CTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 872102 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || |||||||||| |||||| ||| | | | Sbjct 872101 GATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 872042 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || ||||| || || || Sbjct 872041 CTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGAC 871982 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 871981 AAAGATCTGCATTC 871968 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||| | ||| | ||| ||| || || |||||||| || | || ||| || |||| Sbjct 871498 CAGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTC 871439 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||||||| || || ||||| |||| || ||||||||||| |||| || ||||||||| Sbjct 871438 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 871379 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | | ||||| || | ||| || |||| ||||| || Sbjct 871378 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGT 871319 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || || || || |||||||| Sbjct 871318 CTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 871286 >seq112 Length=2547449 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| || ||| ||| | || || |||||||| || ||||| Sbjct 1633056 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCTTCAAGCTGCTTGCCTGCAAAG 1633115 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | |||| || ||||||||| |||||| ||||| | | Sbjct 1633116 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTC 1633175 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || || |||| || |||||| Sbjct 1633176 TCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 1633235 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1633236 AAGATCTGCAT 1633246 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | || ||| || | || ||||||||||| || || || Sbjct 1632827 CTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 1632886 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||| |||||| |||||| ||||| | | Sbjct 1632887 GATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATT 1632946 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || ||||| || ||||| Sbjct 1632947 CTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCAC 1633006 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1633007 GAAAATCTGCAT 1633018 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| | || ||| || | || ||||||||||| || || || Sbjct 1633511 CTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCGAA 1633570 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||| | ||||| || ||| |||||| |||||| ||||| | | Sbjct 1633571 GATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATT 1633630 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || |||| || ||||| Sbjct 1633631 CTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1633690 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1633691 GAAGATCTGCAT 1633702 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 1633283 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCTGCAAA 1633342 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | |||| || ||||||||| |||||| ||||| | Sbjct 1633343 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1633402 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 1633403 CTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1633462 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1633463 AAAGATCTGCAT 1633474 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||| || ||| || | || ||||||||||| || ||||| Sbjct 1632600 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCTGCAAAG 1632659 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || ||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 1632660 ATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTC 1632719 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||||| | || ||||| | ||||| || || || |||| || ||||| Sbjct 1632720 TCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 1632779 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1632780 AAGATCTGCAT 1632790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450680400092120