Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq534 129 8e-25 seq452 129 8e-25 seq629 104 3e-17 >seq534 Length=463462 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| || || | ||| | Sbjct 279467 CCTCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 279408 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || |||||||| || || || |||||||||||||| ||||| ||||| | Sbjct 279407 TCAGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 279348 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 279347 CAACGACTCTCTCACC 279332 >seq452 Length=654506 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||| ||| || | |||||||||||| |||||||| ||||||| || | || | Sbjct 331776 CCTCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCT 331717 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | ||||||||| |||||||||||||||||||| || |||||||| | Sbjct 331716 TCAGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAG 331657 Query 39759 CAAC 39762 | || Sbjct 331656 CTAC 331653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| | ||||||||||| || || |||||||| || || || ||||| Sbjct 333046 TGACATGACTCCCATCCTCTGGTATTCACCTACTCGCTTCTCGAAGAAGTTGGTCTTGCC 332987 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 ||||| || || ||||||||||||||||| || || ||| || ||| Sbjct 332986 TTCCAGAGAGATGTTTTCCATGAAATCAAAAGGGTTCTCTGCTTTGTAT 332938 >seq629 Length=368953 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 ||||||||||| ||||||| || || || || ||||| || || || || ||||||||| Sbjct 322535 TATGTTTCATACGGTCCTTGCTCCTCGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAA 322594 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 ||||| || || ||||||| || || | || || || |||| || || || || Sbjct 322595 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 322654 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | ||||| || ||||||||||| ||||| || ||||| || || || | ||| | Sbjct 322655 CTCATCAGAATGAAAGCATCTGCCAAACCCTGCACACCAATGCCAATGGGACGATGGCGT 322714 Query 69136 TTATTTGAACTTTCAGC 69152 | || || | |||||| Sbjct 322715 CTGTTGGAGCGTTCAGC 322731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||||||||| || || || ||| || | || || || || ||||| | Sbjct 318468 TCCACCCATAGAAATGCATGCTGGTCAGCTTGCCGTAGTTGGGTTCTGCAATGTGAATGT 318527 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | | Sbjct 318528 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 318587 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | |||||| | | || || | ||||| |||| Sbjct 318588 TCTGGGAGATCTCCCACACCGTCTTATAGAGTTGCTTCAGGTCATCAGGAA 318638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686736308613960