Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq207 113 4e-20 seq452 104 2e-17 seq534 82.4 6e-11 >seq207 Length=1524075 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||||||| | || ||||| || ||| ||||||||| ||| Sbjct 1115300 TGATGGCTTTGCCACCTTGTCATGCTCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 1115241 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 1115240 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 1115181 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 1115180 GCTATTCGCTGCTCACATACATGATCGCCCATGTCAC 1115144 >seq452 Length=654506 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || || ||||| ||||| Sbjct 329577 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATCGCCATGGAAAAC 329636 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||| || |||||||| || ||||||||||| || Sbjct 329637 ATACATTCAGAAATGTATAGCCTTCTGATTGACACGTACATCAAGGA 329683 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| |||||||||||| |||||||| || || ||||| Sbjct 331641 GGAGAACGTGTAGTAGCTTTTGCAGCTGTGGAAGGCATCTTCTTTTCTGGCTCTTTTGCT 331700 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || ||||| || | || ||||| || || | Sbjct 331701 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCGGGACTCACTTTTTCTAACGAACTC 331760 Query 44243 ATAAGTCGTGATGA 44256 || ||||| ||||| Sbjct 331761 ATCAGTCGAGATGA 331774 >seq534 Length=463462 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || || |||| ||||| ||| Sbjct 276762 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATCGAGAACGTTCACTCGGAGATG 276821 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | || ||||| || |||||||||||| Sbjct 276822 TACAGCTTGCTTATAGACACTTACATCAAAGAT 276854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397358688984445