Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq112 89.7 4e-13 >seq112 Length=2547449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || || |||||||| || | ||||| | ||||| ||||| || || Sbjct 1633278 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCT 1633337 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | || || || || ||||||| ||| Sbjct 1633338 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1633397 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || ||| ||||| || || || || | ||||| ||||| || Sbjct 1633398 ACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1633457 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1633458 TTCACAAAGATCTGCAT 1633474 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | ||||| ||||||| ||||| || || Sbjct 1633734 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCAAGCTGCTTGCCT 1633793 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| || || || || | || || || || ||||||| ||| Sbjct 1633794 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1633853 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || ||| ||||| || || || || | ||||| ||||| || Sbjct 1633854 ACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 1633913 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1633914 TTCACAAAGATCTGCAT 1633930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || |||| |||| || | || || || || || || ||||| ||| Sbjct 1633018 TGCCACCCCTCAGGCGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGG 1633077 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | ||||| | ||||| ||||| || || || | || || | ||| || || || | Sbjct 1633078 ACAGGGTGCGCCCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGG 1633137 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||||||| |||| | || | ||||| ||| |||| Sbjct 1633138 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAA 1633197 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 1633198 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424830361318968