Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq112 152 2e-31 seq174 147 7e-30 seq432 134 4e-26 seq249 111 5e-19 >seq112 Length=2547449 Score = 152 bits (168), Expect = 2e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| ||||||||||||||||| || || || || ||||| | || ||||||||| Sbjct 1633263 AGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1633322 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || |||||||| || | ||||| ||||| ||||| ||||| || ||| Sbjct 1633323 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633382 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| || ||||| ||||| || | ||| Sbjct 1633383 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1633442 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1633443 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633474 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || |||||||| || || || |||||||| | || || ||||| Sbjct 1632807 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1632866 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| | | ||||| ||||||||||| || ||||| ||| Sbjct 1632867 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1632926 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 1632927 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1632986 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || || || ||||||||||| Sbjct 1632987 TTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 1633018 Score = 140 bits (154), Expect = 1e-27 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || |||||||| || || || |||||||| | || || ||||| Sbjct 1633491 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1633550 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| | | ||||| ||||||||||| || ||||| ||| Sbjct 1633551 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1633610 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 1633611 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633670 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 1633671 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1633702 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || || || || || || || ||||| || | || ||||||||| Sbjct 1633035 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCT 1633094 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || |||||||| || | ||||| ||||| ||||| ||||| || ||| Sbjct 1633095 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633154 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || ||||| ||||| || | ||| Sbjct 1633155 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633214 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 1633215 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 >seq174 Length=2103569 Score = 147 bits (162), Expect = 7e-30 Identities = 359/537 (67%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 ||||| ||||| | || ||||| || || ||||| || | || || ||||||| || Sbjct 1763742 CTTATCTTTGACCTTGGAGGTGGCACCTTCGATGTGTCCATTCTGACTATTGAAGATGGC 1763683 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || ||||| || ||| | ||||| ||||| || || || ||||||||||| ||||| || Sbjct 1763682 ATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACCTGGGTGGAGAAGACTTTGACAAC 1763623 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGA 349950 || | || || || | || || ||||| ||||| || | || || | || Sbjct 1763622 CGCATGGTCAACCACTTCATCGCTGAGTTCAAGCG-CAAGCACAAGAAAGACATCAGTGA 1763564 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || |||||| | |||||||| | ||||| || ||||| || |||||| || | || Sbjct 1763563 GAACAAGAGAGCAGTTCGTCGCCTTCGCACTGCATGCGAACGCGCGAAGCGTACCCTGTC 1763504 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 || | || || || ||| ||||| |||||||| ||| |||| || |||| | Sbjct 1763503 GTCCAGCACACAGGCCAGTATCGAAATCGATTCTCTCTATGAGGGCATTGACTTCTACAC 1763444 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATG 350128 ||| || || | ||||| |||||||| || | | || || || | | || || Sbjct 1763443 ATCCATCACCAGAGCTCGCTTTGAAGA--GCTGAACGCCGACCTGTTCCGTGGCACCCTG 1763386 Query 350129 GATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTA 350188 ||||| || || || | | ||||| || | |||| |||||| | || | Sbjct 1763385 GATCCCGTAGAGAAGGCCCTGCGGGATGCCAAGCTAGACAAATCTCAGATCCACGACATT 1763326 Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || | || ||||| || || ||||| ||||| | || | | || || || || Sbjct 1763325 GTGCTGGTCGGTGGCTCCACTCGTATCCCAAAGATCCAGAAACTCCTGCAGGATTTCTTC 1763266 Query 350249 AATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 ||||||||||| | | ||| | || ||||| |||||||| || || |||||||| Sbjct 1763265 AATGGCAAAGAGCTGAACAAGAGC-ATCAATCCCGATGAAGCCGTAGCTTATGGTGC 1763210 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| || || ||||||| || Sbjct 1764010 ACTGTTACTAATGCTGTGGTCACTGTACCAGCCTATTTCAACGACTCCCAGCGCCAGGCT 1763951 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | || || || |||| || ||||| || || Sbjct 1763950 ACAAAAGATGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCGACA 1763891 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || || || ||||| || || || Sbjct 1763890 GCAGCTGCTATAGCCTATGGTCTGGACAA 1763862 Score = 95.1 bits (104), Expect = 4e-14 Identities = 117/157 (75%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 1764272 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 1764216 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| ||||| ||||| || | ||| | || ||||| ||||||||||| || || Sbjct 1764215 GTGCAGGTGGAATACAAAGGAGAG-ACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCAT 1764157 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||||||||||||| Sbjct 1764156 GGTTTTAACCAAAATGAAGGAAATTGCTGAAGCATAT 1764120 >seq432 Length=995019 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || ||||||||||| || || || || ||||| | || || || ||| Sbjct 871497 AGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 871438 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| ||||||||||| || | ||||| || || ||||| || || || ||| Sbjct 871437 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 871378 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| ||||||||||| | || | ||| Sbjct 871377 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTC 871318 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 871317 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 871286 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| ||||| || || || || || || || || || | || ||||| ||| Sbjct 871953 AGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 871894 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || ||||| ||||| || | |||||||| || ||||| ||||| || ||| Sbjct 871893 TCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCC 871834 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || |||||||| | || | ||| Sbjct 871833 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTC 871774 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || |||||||||||||| Sbjct 871773 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 871742 Score = 123 bits (136), Expect = 8e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||||||||| || || || || || | || ||||||||| Sbjct 872181 AGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 872122 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||| || || ||||| || || || ||| Sbjct 872121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 872062 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || || || || | || | ||| Sbjct 872061 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTC 872002 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | || || ||||| ||||||||| Sbjct 872001 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 871969 Score = 120 bits (132), Expect = 9e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| ||||| || || || || || || || | || || || ||||| | Sbjct 871720 CAAG-TGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCA 871662 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | ||||| ||||||||||| || | ||||| || || ||||| || || || ||||| | Sbjct 871661 GCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 871602 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| ||||| | ||| ||||||||||| | || | ||||| | Sbjct 871601 TCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTCTTAC 871542 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | || || ||||| |||||||| Sbjct 871541 CTGTCAAGGTCTTGACAAAGATCTGCAT 871514 >seq249 Length=1325728 Score = 111 bits (122), Expect = 5e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| |||||||| ||||| |||||| | Sbjct 207793 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCTGGATTAATGCCACGAGAAGGCT 207852 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || || ||| || | |||||| ||||| || || | ||| || |||| Sbjct 207853 CTTTGCCATTGAAGAACTCTTTAACAAGTTGTTGTATTTTGGGGATGCGAGTAGAGCCAC 207912 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 |||| | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 207913 CGACAAGAACAATCTCATCAATATCAGACTTCTTCAGGTCAGAGTCTTCCAGAACTTTCT 207972 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 207973 GAACAGGCTTCATTGT 207988 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | || ||||| ||||| || || || ||| | ||||| | | Sbjct 207934 ATTGATGAGATTGTTCTTGTCGGTGGCTCTACTCGCATCCCCAAAATACAACAACTTGTT 207875 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||||||||| |||||| | |||||||||||||| ||||| || Sbjct 207874 AAAGAGTTCTTCAATGGCAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTAGCC 207815 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 207814 TATGGTGCAGCTGTTCAGGC 207795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514864388196467