Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq534 95.1 1e-14 seq320 91.5 2e-13 seq196 86.0 7e-12 >seq534 Length=463462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 279465 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 279406 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||||||||| ||| || || || |||||||||||||||||| |||||||| Sbjct 279405 AGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 279346 Query 74892 AC 74893 || Sbjct 279345 AC 279344 >seq320 Length=1959101 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 811713 GTGAAAATATAACGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTGA 811772 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | | || || | ||||| || |||||||| ||||||||||||||| Sbjct 811773 CCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 811832 Query 117425 ATCGT 117429 || || Sbjct 811833 ATAGT 811837 >seq196 Length=1610251 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | || || ||||| ||||| || |||||||| Sbjct 885696 GTGAAGATGTATCGAGGGCTTGCAGAGTCTTTCCCACCGTGCAGCCTTGTGCCAAACTGA 885755 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | |||||||||||| |||||| || |||||||| || || | | Sbjct 885756 CCAATGGGCTGCAGCAAGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCTAAGTTAATA 885815 Query 152149 ATCGT 152153 || || Sbjct 885816 ATGGT 885820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547078587222200