Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq356 132 6e-26 >seq356 Length=841904 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 || || |||| |||| | |||| ||||| || ||||| | ||||| | |||||||| Sbjct 743925 GCTTTATGGTGGTATTATGTCTCCAAAGGAATTGAATACTTGGATACAGTATTCTTCATC 743866 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| ||||||||||||||| |||| || | || || || |||||||| |||||||| Sbjct 743865 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 743806 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 ||||| | ||||| || ||||||||| ||||||| ||||| Sbjct 743805 ACTTTGTGGTGGATTGGTATTAAATGGGTTGCAGGTGGACA 743765 Score = 82.4 bits (90), Expect = 9e-11 Identities = 100/135 (74%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 32826 GGACAGGCATTTTTTGGAGCACAGATAAATTCTTTTATACATGTTATAATGTATAGTTAT 32885 |||||| | ||||||||||| ||||| ||| | ||||| ||||| || ||||| | ||| Sbjct 742023 GGACAG-CTTTTTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTAT 741965 Query 32886 TACGGATTAACAGCAATAGGTCCTTCCTTGCGAAAATATCTATGGTGGAAAAAATATTTA 32945 ||||||||| | || || ||| || | ||||| || ||||||||| ||| || Sbjct 741964 TACGGATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTG 741905 Query 32946 ACTATCATACAATTG 32960 || || | |||||| Sbjct 741904 ACCATATTGCAATTG 741890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603029333761360