Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq30 273 3e-68 >seq30 Length=4989583 Score = 273 bits (302), Expect = 3e-68 Identities = 623/930 (67%), Gaps = 18/930 (2%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||| ||| |||| | ||| ||||| |||||||| || || |||||| |||| Sbjct 2267195 CCGCTGAGTGAGGAGGAGGCTGCGTTCCCCATTGCCTACTCCATAGTCATCCACAACAAA 2267254 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||||||||||| |||||| || |||||||| || |||||| |||||||| || Sbjct 2267255 ATCGAGATGTTCGAGCGGCTCCTGCGGTCCATCTACATGCCACAGAACGTCTACTGCATC 2267314 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||||| ||| ||||||| | || ||| || ||| |||||||||| ||| Sbjct 2267315 CACGTAGACAGCAAGTCCCCAGCCGCCTTCCAGGAGGCCGTGAGGGCCATCGCCGCCTGC 2267374 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| ||||| ||| ||| | ||||| || | ||||||| ||| Sbjct 2267375 TTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAGGGTGGTCTATGCCTCCTGGTCACGC 2267434 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||| ||||||| ||||||| ||||||| ||| || ||| | || Sbjct 2267435 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCTGTGCCATGGCGCTAT 2267494 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| ||||| | |||||||| |||| |||||| |||||| || || || Sbjct 2267495 GTCCTCAACACCTGCGGCACCGACTTCCCCATCAAAACCAACGCGGAGATGGTCCGCGCC 2267554 Query 14031 CTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAG--GGCAT-GCCCAACCACAAG 14087 || || ||| || ||||| | ||||| |||| | ||| | || || | || Sbjct 2267555 CTCCAGCTGCTGCAGGGGCAGAACAGCATGGAGTCCGAGAAGCCATCGTCCTACAAGCAG 2267614 Query 14088 CTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGC 14147 |||| | | | || | | |||| ||| | || ||| | | | || | | Sbjct 2267615 CTGCGCTGGA--AGTACCA-CCACGAAGTG----GGGGAGGCCATCTCG--CAGACAGCC 2267665 Query 14148 AGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCG 14207 | | ||| ||| |||| ||||| ||||| || |||| | ||| ||| | ||| Sbjct 2267666 ACCGAGAAGCAGCCGTCGCCACTCAGCTCGCCCATGTTCACGGGCAGCGCGTACGTGGCG 2267725 Query 14208 GTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TCATG 14264 || || |||| |||||| | | || || ||||| || | ||| |||| || | Sbjct 2267726 GTGACGCGGGCCTTCGTGCAGCACATCTTCGAGGAC---CCCGCGGCGCTGCGGTTCCTC 2267782 Query 14265 CACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG 14324 | ||| | ||||||| |||||||||||||||||| | ||||||||| | | || Sbjct 2267783 GAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCACCCGCGTG 2267842 Query 14325 TACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCC 14384 ||| ||| || | | ||| ||| ||||| ||| |||||||||| ||| Sbjct 2267843 CCCGGCGTGCCGGGCGCCCTGCCCCACAACGACAAGTTCGAGCTCTCGGACATGAACGCC 2267902 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | | | ||||||||||| ||| ||||| || | || || || || | ||| Sbjct 2267903 CTGCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGAGCGCCCTAC 2267962 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 ||||| ||| |||| | || | |||| ||||||||| |||| |||| ||| || Sbjct 2267963 CCGCCCTGCACCGGCCGCTACCAGCGCGCCGTCTGCATCTACGGGGCCGGGGACCTGCCC 2268022 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTC 14564 ||| || | | | ||||| || ||||||||||||||| | || |||||| | Sbjct 2268023 TGGATGCTGCGGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCAGGTGGACGATGCC 2268082 Query 14565 GCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||| | | || || || ||| || ||||| Sbjct 2268083 GCCATCCAGTGCCTCGAGGAGCACCTGCGC 2268112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658573782352640