Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq112 114 1e-20 >seq112 Length=2547449 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || ||||| || || || Sbjct 1633703 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1633644 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||| ||||| || || || || Sbjct 1633643 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCA 1633584 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || |||| || || ||| | || |||||||| Sbjct 1633583 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAA 1633524 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | ||| | || |||| || | |||||||| Sbjct 1633523 CATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGCAT 1633473 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||| |||||| | || || ||||| || || || Sbjct 1633019 CATGCAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1632960 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||| ||||| || || || || Sbjct 1632959 TGACACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCA 1632900 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | ||| ||||| || |||| || || ||| | || |||||||| Sbjct 1632899 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAA 1632840 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | ||| | || |||| || | |||||||| Sbjct 1632839 CATCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGAGGTGGCAT 1632789 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || Sbjct 1633247 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 1633188 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || || || ||||| |||||||| || || || || Sbjct 1633187 TGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCA 1633128 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || | ||||| | ||| | ||||||||||| Sbjct 1633127 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGATTACAA 1633068 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | || |||| |||| || |||||||||| Sbjct 1633067 CATCCAGAAGGAATCCACCCTCCACCTGGTGCTGCGCCTGAGGGGTGGCAT 1633017 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || || || || || || || Sbjct 1632791 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAG 1632732 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || ||||| |||||||| || || || || Sbjct 1632731 CGATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 1632672 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | ||||||||||| Sbjct 1632671 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGATTACAA 1632612 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||| || ||| | || | || |||| || |||||||| Sbjct 1632611 CATCCAGAAGGAATCCACCCTCCACCTTGTGCTGCGCCTGAGGGGTGGC 1632563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434809186553280