Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq393 113 4e-20 seq207 84.2 2e-11 >seq393 Length=935136 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || |||||||||||||| ||||| |||||||| ||||| || || ||||| ||| Sbjct 207499 GTGGTGGAGGAGCTCTTCCGAGACGGGGTGAACTGGGGCCGCATCGTGGCCTTCTTCGAG 207558 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | |||| || |||| | Sbjct 207559 TTCGGCGGCGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTGGTGGACAGC 207618 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 207619 ATCGCCGCCTGGATGACCGA 207638 >seq207 Length=1524075 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 |||||||| | || || ||||||||||| | || |||||||| | ||| ||||| Sbjct 1115138 AGCCCTGTGACATGGGCGATCATGTATGTGAGCAGCGAATAGCTGGCAATATTGAAAGGC 1115197 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || || || ||||| ||| | || ||||| || | ||||||||| | || || ||| | Sbjct 1115198 ACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTTAGA 1115257 Query 118654 ACATAAAACTG 118664 ||||| ||||| Sbjct 1115258 ACATAGAACTG 1115268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414375321702196