Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq112 188 2e-42 seq432 150 4e-31 seq57 89.7 1e-12 >seq112 Length=2547449 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| |||||||| |||||||| || || | ||||| | |||||| Sbjct 1633263 AGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 1633322 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| |||| |||||||||||| Sbjct 1633323 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633382 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||| || | |||||||| || ||||| ||| Sbjct 1633383 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1633442 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1633443 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633474 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || |||||||| ||||| | ||||| | ||||||| Sbjct 1632579 AGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCT 1632638 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| || | |||||||||||| Sbjct 1632639 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 1632698 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||| || | ||||||||||| ||||| ||| Sbjct 1632699 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCGAGGGTGATGGTC 1632758 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1632759 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1632790 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||| || || |||||||| ||||| | ||||| | |||||| Sbjct 1633035 AGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGCCCATCT 1633094 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||| ||||| || | || |||||||| |||| |||||||||||| Sbjct 1633095 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCC 1633154 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||||||| | |||||||| || ||||| ||| Sbjct 1633155 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633214 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 1633215 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 1633246 Score = 172 bits (190), Expect = 1e-37 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || ||||| || || |||||||| || || | ||||| | || ||| Sbjct 1633719 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 1633778 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||||||| ||||| || | || ||||| ||||||| |||||||||||| Sbjct 1633779 TCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 1633838 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || ||||| || | |||||||| || ||||| ||| Sbjct 1633839 TGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTC 1633898 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | |||||| || Sbjct 1633899 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1633933 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||||||||| |||||||| ||||| | ||||| | ||||| Sbjct 1633491 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1633550 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || ||||||||||||| || || |||||| Sbjct 1633551 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1633610 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 1633611 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1633670 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1633671 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1633702 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||||||||| |||||||| ||||| | ||||| | ||||| Sbjct 1632807 AGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCC 1632866 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || ||||||||||||| || || |||||| Sbjct 1632867 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCTTTGTCC 1632926 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || || |||||| | |||||||| || ||||| ||| Sbjct 1632927 TGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 1632986 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 1632987 TTGCCAGTCAAGGTCTTCACGAAAATCTGCAT 1633018 >seq432 Length=995019 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||||||||||||||| || || | ||||| | |||||| Sbjct 872181 AGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 872122 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| || ||||||||| Sbjct 872121 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 872062 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || ||||| | ||||| ||| Sbjct 872061 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTGATGGTC 872002 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | ||||| ||||| | ||||||| Sbjct 872001 TTGCCTGTCAAGGTCTTGACAAAGATCTGCATT 871969 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || || | ||||| | ||| ||| Sbjct 871725 AGCACCAAGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 871666 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||| || |||| || ||||||||| Sbjct 871665 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 871606 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||| || | ||||| ||| Sbjct 871605 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTC 871546 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| ||||| | |||||| Sbjct 871545 TTACCTGTCAAGGTCTTGACAAAGATCTGCAT 871514 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || |||||||| |||||||| || || | ||||| | ||| ||| Sbjct 871497 AGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCT 871438 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||| || |||| || ||||||||| Sbjct 871437 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 871378 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | |||||| || | ||||| ||| Sbjct 871377 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTGATGGTC 871318 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 871317 TTGCCAGTCAGGGTCTTGACGAAGATCTGCATGTT 871283 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || |||||||| || || |||||||| || || | ||||| | || ||| Sbjct 871953 AGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCGTCT 871894 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || | || || || || |||| |||||||||||| Sbjct 871893 TCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGAATACCTTCCTTGTCC 871834 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | ||||| || | ||||| ||| Sbjct 871833 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACTTCCAAGGTGATGGTC 871774 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 871773 TTGCCAGTCAGGGTCTTCACAAAAATCTGCAT 871742 >seq57 Length=3732625 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||| || |||| || || | ||||| |||||||||||||| ||||||| Sbjct 1624389 CTTTTTGGATGTTGTAGTCCGACAGCGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGA 1624448 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAA 211008 | || || || ||||||||||||| Sbjct 1624449 TCAGCCGCTGCTGGTCAGGAGGAA 1624472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158853645504485