Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq432 98.7 7e-16 seq112 98.7 7e-16 >seq432 Length=995019 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || ||||| | |||||||| ||| Sbjct 871742 ATGCAGATTTTTGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAGCCCAGT 871801 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || || ||||| |||||| | || |||||||| Sbjct 871802 GACACCATTGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGTATTCCCCCAGATCA 871860 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || || ||||||| ||||| | ||| ||||| Sbjct 871861 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTTGAAGACGGGCGCACCCTGTCCGACTACAA 871920 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 871921 CATCCAGAAGGAATCCAC 871938 Score = 82.4 bits (90), Expect = 5e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| | || || || ||| Sbjct 871969 AATGCAGATCTTTGTCAAGACCTTGACAGGCAAGACCATCACCTTGGAGGTCGAGCCCAG 872028 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || | || | | ||||| || || | || ||||| | Sbjct 872029 TGACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGCATTCCCCCAGACC 872087 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| ||||| || |||||||| | ||||| | ||| |||| Sbjct 872088 AGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACA 872147 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||||||||| || Sbjct 872148 ACATCCAAAAAGAGTCAAC 872166 >seq112 Length=2547449 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| | || || || || ||||| || || ||||| ||| Sbjct 1633018 ATGCAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1632959 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | |||||||| || | || || || || Sbjct 1632958 GACACTATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAAGAGGGCATTCCTCCTGACCA 1632900 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||| || ||||| || | ||||| | |||||||| Sbjct 1632899 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAA 1632840 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 1632839 CATCCAGAAAGAGTCCAC 1632822 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| ||||| ||| Sbjct 1632790 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1632731 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | | || || || ||||| ||||| | || || || || Sbjct 1632730 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAG 1632671 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || |||||||| | |||||| | |||||||||| Sbjct 1632670 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGATTACAAC 1632611 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 1632610 ATCCAGAAGGAATCCAC 1632594 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| || || ||||| ||| Sbjct 1633702 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 1633643 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | |||||||| || | || || || || Sbjct 1633642 GACACCATTGAGAATGTGAAGGCCAAGA-TCCAGGACAAAGAGGGCATTCCTCCTGACCA 1633584 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || ||||| || ||||| || | ||||| | |||||||| Sbjct 1633583 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAA 1633524 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 1633523 CATCCAGAAAGAGTCCAC 1633506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337926843525212