Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq207 91.5 1e-13 seq59 87.8 1e-12 >seq207 Length=1524075 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || || |||| | || Sbjct 1118529 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCTCTGGTGC-CAAA 1118587 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 1118588 ACCCTGCTTATCCAGGAATTCACGTGATCCATTGGCATCCCAAATCTTCACACCCTTTGC 1118647 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCC 30162 |||||||| |||| ||||| || || Sbjct 1118648 AGAGAGCTCCTTGGCATTTGTCGAACC 1118674 >seq59 Length=3680066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | ||| | || ||| || || Sbjct 478727 TTGAGCTCCCTGCTGAGCACTATATTAACTCTGTCTTTTAAAGGACGATGCTTCTCAGGA 478668 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 478667 ATGGAGAACCAGGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCT 478620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406063757159854