Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq452 116 3e-21 seq534 105 6e-18 >seq452 Length=654506 Score = 116 bits (128), Expect = 3e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| || || |||||||||||||| || | ||| |||||||| ||||| || || Sbjct 331774 TCATCTCGACTGATGAGTTCGTTAGAAAAAGTGAGTCCCGGCATTAATCCTCTTTTCTTC 331715 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 331714 AGCCAAAAAATTGAAGCAAAAGAGCCAGAAAAGAAGATGCCTTCCACAGCTGCAAAAGCT 331655 Query 4692 ACTA 4695 |||| Sbjct 331654 ACTA 331651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 ||||| | || ||||| || || |||||||||||||| |||||||| ||||| || || | Sbjct 329681 CTTGA-TGTACGTGTCAATCAGAAGGCTATACATTTCTGAATGTATGTTTTCCATGGCGA 329623 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 |||| || || || || || | ||||||||| | ||| ||||| Sbjct 329622 TCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 329580 >seq534 Length=463462 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| ||||| || || || |||||||||||||| |||| || Sbjct 276173 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAA 276114 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 | ||||| |||||||||| ||| || | || || || |||||||| || | || || | Sbjct 276113 CGTGAGAGATAAAGTACTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 276054 Query 5041 TTAAATCAAC 5050 ||||||||| Sbjct 276053 ATAAATCAAC 276044 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 279465 TCATCTCTGCTAATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 279406 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| ||||| ||||| || || || ||||| |||||||| || || ||||| || Sbjct 279405 AGCCAAAAGATAGCAGCAAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGCA 279346 Query 4692 AC 4693 || Sbjct 279345 AC 279344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426945043444637