Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq352 149 9e-31 seq143 149 9e-31 >seq352 Length=848651 Score = 149 bits (164), Expect = 9e-31 Identities = 217/307 (71%), Gaps = 0/307 (0%) Strand=Plus/Minus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338 || || || ||||| || | |||| |||| ||| |||||| || || || || Sbjct 57574 TCCGGCACGCGGAAGGCCACGTACGGGCACCTCTTCACGTTGAGGCACACCAGCTTCTCC 57515 Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398 | | ||| ||||||| ||| | || || ||||||| ||||| |||||||||||| Sbjct 57514 AGGGATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGCTTCCAG 57455 Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458 ||| |||||||||||||| ||| | | || || || ||||| || ||||| || | | Sbjct 57454 TACTCCGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAAGGGAGCTCCGATC 57395 Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518 || | ||||| || ||||| ||| ||||||| |||| || || | || || || | | Sbjct 57394 TCCACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCTGGG 57335 Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578 || | ||||| || |||| |||||| || || || || || ||||| |||||| Sbjct 57334 TAAAACTCCAGCGCGTCGATGTCTCCATAGAGCTCCTCCAGCTCTGCAGCCTTCTCCTCC 57275 Query 8579 TCTCCTG 8585 ||||||| Sbjct 57274 TCTCCTG 57268 Score = 118 bits (130), Expect = 2e-21 Identities = 178/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| || || Sbjct 55464 TCACCGATGAGGATGAGCCGAGCTGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGGTGC 55405 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || | ||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 55404 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 55345 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | || || || |||| ||||| | ||||| || | | | ||| Sbjct 55344 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 55285 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || || | |||||| ||| | | || ||||||||||||| |||| || Sbjct 55284 ACGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGGTGACCGAGGGGGGGTACACCTCT 55225 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 55224 CCATCCACCACCT 55212 >seq143 Length=2104023 Score = 149 bits (164), Expect = 9e-31 Identities = 178/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || ||||| | ||||| ||| ||| |||||||| || |||||||| Sbjct 1113224 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 1113165 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||| || ||||| || || || |||||||| | || || Sbjct 1113164 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 1113105 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || || | ||||| Sbjct 1113104 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 1113045 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | ||| ||||||||||| || || |||||| Sbjct 1113044 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCTATCATC 1112985 Query 9484 TG 9485 || Sbjct 1112984 TG 1112983 Score = 143 bits (158), Expect = 4e-29 Identities = 221/314 (70%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 1115235 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 1115176 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || ||||||||||||||||||||| | |||| Sbjct 1115175 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCTGGGG 1115116 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | ||||| | || |||| || ||||| || ||||| || || || | || | || Sbjct 1115115 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCGATTTCTACCATTG 1115056 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || |||||||| || || || ||||| || | || ||| | |||||||||| Sbjct 1115055 TTTCGCCAAAGATGGCACCTGGTCGTGGTTTTTCTACAAGGAGTCCTGGATACAGCTCCA 1114996 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| ||||| || || ||||||||||| Sbjct 1114995 TAGCATCTATGTCTCCATAAAGCTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 1114936 Query 8588 TTATTAATAAAAAA 8601 ||||| || || || Sbjct 1114935 TTATTGATGAATAA 1114922 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || |||||||| || | ||||| || || | |||| ||| Sbjct 1111548 ACCTTTAACACCCATTGGTGTTGGACAGTCACGTCCTACCGGGGGAAGGCTTCTTGTGTA 1111489 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 |||||| |||||||| ||| ||||||| || ||| | ||||| ||||| | || Sbjct 1111488 ATAGGAAAGATTGGAATAAGTTTCCCAGTTTTTGTAATTATAGTCACTATTGTAAGTTGG 1111429 Query 10030 AGGGCTGTCAATCAAATCGGATCT 10053 |||||||||||||||| ||||| Sbjct 1111428 TGGGCTGTCAATCAAATGTGATCT 1111405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716696783274560