Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq112 149 2e-30 seq432 129 1e-24 >seq112 Length=2547449 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || || || || || || |||||||||||||| | ||| || | Sbjct 1632787 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGCG 1632730 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| |||||||| || ||||| |||||||| ||||| ||||| || ||||||| Sbjct 1632729 ATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 1632670 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || ||||||| ||| Sbjct 1632669 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGATTACAACA 1632610 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || ||||| Sbjct 1632609 TCCAGAAGGAATCCACCCTCCACCTTGT 1632582 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 1633699 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 1633642 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| ||||||||||| || || ||||| ||||||| Sbjct 1633641 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAGC 1633582 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | ||||| ||| Sbjct 1633581 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAACA 1633522 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||||||||| || | || ||| Sbjct 1633521 TCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGA 1633481 Score = 136 bits (150), Expect = 1e-26 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||||||||| || | || || || || |||||||| ||||| || || ||| Sbjct 1633015 CAGATTTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 1632958 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || ||||| ||||||||||| || || ||||| ||||||| Sbjct 1632957 ACACTATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCTCCTGACCAGC 1632898 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | |||||||| || || ||||| || ||||| | || || | ||||| ||| Sbjct 1632897 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCTGATTACAACA 1632838 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| ||||| || || ||||||||||| || | || ||| Sbjct 1632837 TCCAGAAAGAGTCCACCCTGCATCTTGTGCTGCGCCTGAGA 1632797 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 1633243 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 1633186 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| |||||||| ||||| || || || ||||||| Sbjct 1633185 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGC 1633126 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || ||||||| ||| Sbjct 1633125 AGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGGCGCACCCTGTCCGATTACAACA 1633066 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || || || || Sbjct 1633065 TCCAGAAGGAATCCACCCTCCACCTGGT 1633038 >seq432 Length=995019 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || |||||| | || || ||| | ||| Sbjct 871289 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCTTGGAAGTTGAACCCAGTGAC 871348 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||| || || || || ||||||||||| Sbjct 871349 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 871408 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| ||||| ||| | || || | || || ||| || Sbjct 871409 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCTGACTACAACATC 871468 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || |||||||| || Sbjct 871469 CAGAAAGAGTCTACCCTGCATCTCGT 871494 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | ||||| || || |||||| | || || ||| | ||| Sbjct 871517 CAGATCTTTGTCAAGACCTTGACAGGTAAGACCATCACCTTGGAAGTTGAACCCAGTGAC 871576 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| ||||| |||||||| || || || || ||||||||||| Sbjct 871577 ACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 871636 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| ||||| ||| | || || |||| || ||| || Sbjct 871637 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGACGCACCCTGTCCGACTACAACATC 871696 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 871697 CAGAAGGAGTCCACTCTGCA-CTTG 871720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203421371250266