Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anas_20zonorhyncha_20[genbank_20GCA_5F002224875.1_202017-07-25] 20,089 sequences; 1,310,797,575 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq432 136 4e-27 seq112 129 5e-25 >seq432 Length=995019 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | || || | ||| ||||| || ||| |||||||| ||||| |||||||| Sbjct 871968 CCGCCTCTGAGGCGCAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 871909 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| |||| || ||||||||||| ||||| ||||| | ||| || || | |||| Sbjct 871908 AGGGTGCGCCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGA 871849 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | ||||||||| ||| || ||| | | | ||||| || | ||| || Sbjct 871848 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACT 871789 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || ||||| ||||| || |||||||||||| Sbjct 871788 TCCAAGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAAATCTGCATG 871741 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || ||| ||||| ||||| ||||| || |||||||| Sbjct 871503 AGGCGCAGCACGAGATGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGT 871444 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||| ||||| || || ||||| | ||| ||||||| ||||| || |||| Sbjct 871443 CCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCC 871384 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | || || |||| || Sbjct 871383 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACTTCCAAGGTG 871324 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| ||||||||||| Sbjct 871323 ATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGTT 871283 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| || ||| || || ||||| |||||||| ||||||||| Sbjct 872187 AGGCGCAGCACGAGATGCAGGGTTGACTCTTTTTGGATGTTGTAGTCGGACAGGGTGCGC 872128 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || |||| Sbjct 872127 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCC 872068 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | | ||||| || | ||| ||||||| || Sbjct 872067 TTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCCAAGGTG 872008 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || |||| ||||| || || |||||||| Sbjct 872007 ATGGTCTTGCCTGTCAAGGTCTTGACAAAGATCTGCAT 871970 >seq112 Length=2547449 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| ||| ||||| ||||| || || || |||||||| Sbjct 1632801 AGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGA 1632860 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | |||| || ||| Sbjct 1632861 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCT 1632920 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||| || | ||| ||||| | || Sbjct 1632921 TTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTGTCACTGGGCTCAACCTCAAGGGTG 1632980 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || |||| ||||| ||||||||||||||| Sbjct 1632981 ATGGTCTTGCCAGTCAAGGTCTTCACGAAAATCTGCATG 1633019 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| |||||||| ||||| || ||||| ||||||||| Sbjct 1633029 AGGCGCAGCACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCGGACAGGGTGCGC 1633088 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 1633089 CCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 1633148 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| ||||| | || Sbjct 1633149 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTG 1633208 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 1633209 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633247 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| |||||||| ||| ||| ||||| ||||| || || || |||||||| Sbjct 1633485 AGGCGCAGCACAAGATGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGA 1633544 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | |||| || ||| Sbjct 1633545 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCT 1633604 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | ||||| || | ||| ||||| | || Sbjct 1633605 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 1633664 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| ||||| ||||||||| Sbjct 1633665 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1633703 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| |||||||| ||||| ||||| || ||||||||| |||| || Sbjct 1633722 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCA 1633781 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | |||| || ||||||||| | Sbjct 1633782 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 1633841 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | || ||||| | ||| ||||| | || || || || Sbjct 1633842 ATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTG 1633901 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| || || ||||||||||| Sbjct 1633902 CCAGTCAGGGTCTTCACAAAGATCTGCATGTT 1633933 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | || || | ||| || || || ||| |||||||| ||||| || || Sbjct 1632560 ACGGCCACCCCTCAGGCGCAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAATC 1632619 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 ||| |||||||| | || || ||||||||||| || || ||||| | ||| ||||| | Sbjct 1632620 GGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 1632679 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||||||| ||| || ||||| | | || ||||| | ||| Sbjct 1632680 GGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTC 1632739 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| | || || || || || ||||| ||||| ||||| ||||||||| Sbjct 1632740 AACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 1632791 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || || || || ||| ||||| ||||| ||||| || ||||||||| Sbjct 1633257 AGGCGCAGCACAAGGTGAAGAGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGC 1633316 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 1633317 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 1633376 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | || ||||| | ||| ||||| | || Sbjct 1633377 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTG 1633436 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 1633437 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 1633475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462187909686800