Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq37 105 8e-18 seq11 102 1e-16 seq313 89.7 6e-13 >seq37 Length=6782005 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | || || || || || ||||| || ||||| ||||| ||||||| Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468 Query 24277 CAATAAGTCTTTCTCC 24292 ||| || ||| || || Sbjct 2516469 CAACAACTCTCTCACC 2516484 >seq11 Length=12384036 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||| ||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406 Query 24277 C 24277 | Sbjct 4522405 C 4522405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446 || ||| |||||| || ||||| ||||||| ||| ||||||||||| ||||| || ||| Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312 Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || ||||| || || || || |||||||| | ||| || || | ||||||||| Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258 >seq313 Length=537090 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 ||||| || |||||||||| || || || |||||||| || || || || ||||| ||| Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 |||||||| || || |||| || || | || || ||| | || ||||| || || Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 | | | ||| || || ||||| | || || |||||||| || || || | ||| | Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900 Query 53570 TTATTAGAGATTTCAGC 53586 | || ||| |||||| Sbjct 220899 CTGTTGGAGCGTTCAGC 220883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| || ||||||||||| ||||| || || || || || || || || | Sbjct 211463 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTTGCTGCCAGGA 211404 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | || ||||| || |||| || || || || || |||| || | ||| ||||||| Sbjct 211403 TAGCGTAATCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTGTCCA 211344 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | ||||| || || ||||| Sbjct 211343 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 211298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593665248398640