Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq37 105 8e-18
seq11 102 1e-16
seq313 89.7 6e-13
>seq37
Length=6782005
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||||||||| | || || || || || ||||| || ||||| ||||| |||||||
Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468
Query 24277 CAATAAGTCTTTCTCC 24292
||| || ||| || ||
Sbjct 2516469 CAACAACTCTCTCACC 2516484
>seq11
Length=12384036
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| |||| ||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406
Query 24277 C 24277
|
Sbjct 4522405 C 4522405
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 24387 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 24446
|| ||| |||||| || ||||| ||||||| ||| ||||||||||| ||||| || |||
Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312
Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
|| ||||| || || || || |||||||| | ||| || || | |||||||||
Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258
>seq313
Length=537090
Score = 89.7 bits (98), Expect = 6e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449
||||| || |||||||||| || || || |||||||| || || || || ||||| |||
Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020
Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|||||||| || || |||| || || | || || ||| | || ||||| || ||
Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960
Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569
| | | ||| || || ||||| | || || |||||||| || || || | ||| |
Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900
Query 53570 TTATTAGAGATTTCAGC 53586
| || ||| ||||||
Sbjct 220899 CTGTTGGAGCGTTCAGC 220883
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| ||||| || || || || || || || || |
Sbjct 211463 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTTGCTGCCAGGA 211404
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| || ||||| || |||| || || || || || |||| || | ||| |||||||
Sbjct 211403 TAGCGTAATCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTGTCCA 211344
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | || | ||||| || || |||||
Sbjct 211343 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 211298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593665248398640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |