Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq396 145 9e-30
seq3408 125 9e-24
>seq396
Length=213396
Score = 145 bits (160), Expect = 9e-30
Identities = 199/277 (72%), Gaps = 4/277 (1%)
Strand=Plus/Minus
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|||| |||||| | | | | | |||||||||||||||||||| | |||||||||||
Sbjct 98714 GGGCACGCCGTCGGGAGCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCG 98655
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
||| || |||||| ||| ||| |||| | ||| |||| | ||||||| ||
Sbjct 98654 CACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCGGAGGGGTCGTCGTGCGG 98595
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296
||||| ||||| ||||||| ||||||||| || || |||| | |||| |||
Sbjct 98594 GAAGGGCAGTGCCTCCTTCAGGAAGGTGAAGAGCGGGTGCGCGTCCTTCC--CGTTCACC 98537
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||| | | ||||| |||| | | || || || ||||| ||||||| |
Sbjct 98536 TCGCACTTCTCGAACATGGTGAAGTTGGGCTTGTACCCCTTGCCCGGACGCACGTGCTCC 98477
Query 83357 AGGGAAGGCAAGATCTCNNCATTCTGGGCGTTTTCCT 83393
|| || ||| |||||| | || ||| || ||||
Sbjct 98476 AGCGAGAGCAGGATCTCCTCGTTGGTGGCATTCTCCT 98440
>seq3408
Length=510
Score = 125 bits (138), Expect = 9e-24
Identities = 130/168 (77%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 83376 CATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCC 83435
||| |||||| | |||||| ||||||||||| || ||||| || ||||| ||||| |
Sbjct 313 CATGCTGGGCACCTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGGC 372
Query 83436 CCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTAC 83495
||| | ||| || |||||||| ||| | ||| ||||| ||||| |||||| | |
Sbjct 373 GCCGCGGG--TAG-CGAGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGC 429
Query 83496 CTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543
||||||| ||||| |||||||||||||| | || |||||||| ||||
Sbjct 430 CTCAGAGCGACGCCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 477
Score = 95.1 bits (104), Expect = 1e-14
Identities = 156/217 (72%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 83148 TCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGT 83207
||||||||||||||| | |||| ||| | ||| || ||| | | || |||| |
Sbjct 1 TCTCGAAGTTCCAGGAGATGTCGGAGCGCCGCACGGGGCTCCACACCACGAAGCGGGGCT 60
Query 83208 CGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCGGCAGG--GCCTCTCGTAGGAAGG 83264
|| ||| || ||| ||| | ||||| || || |||||| | || || ||| |||
Sbjct 61 CGGTCATCAG-GTGGTCAGGCTCGTCCACCGGGGCGGGCAGGTGGGCTTTC--AGGTAGG 117
Query 83265 CGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322
|||||| || || || ||| || ||||| |||| |||||||| ||| || | |||||
Sbjct 118 CGAAGACGGGGTGGGTGTCCT-GC-CCGTTCACCTGGCACTTCTGGAACAGGGTGAAGTT 175
Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359
|||||||||||| ||| || || |||||||| |||
Sbjct 176 GGGCTCGAAGCCGCCCCCCGGCCGCACGTGCTTGAGG 212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608739017573720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |