Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq396 145 9e-30 seq3408 125 9e-24 >seq396 Length=213396 Score = 145 bits (160), Expect = 9e-30 Identities = 199/277 (72%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | | | | | |||||||||||||||||||| | ||||||||||| Sbjct 98714 GGGCACGCCGTCGGGAGCGATGAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCG 98655 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| || |||||| ||| ||| |||| | ||| |||| | ||||||| || Sbjct 98654 CACGGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCGGAGGGGTCGTCGTGCGG 98595 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACC 83296 ||||| ||||| ||||||| ||||||||| || || |||| | |||| ||| Sbjct 98594 GAAGGGCAGTGCCTCCTTCAGGAAGGTGAAGAGCGGGTGCGCGTCCTTCC--CGTTCACC 98537 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| | | ||||| |||| | | || || || ||||| ||||||| | Sbjct 98536 TCGCACTTCTCGAACATGGTGAAGTTGGGCTTGTACCCCTTGCCCGGACGCACGTGCTCC 98477 Query 83357 AGGGAAGGCAAGATCTCNNCATTCTGGGCGTTTTCCT 83393 || || ||| |||||| | || ||| || |||| Sbjct 98476 AGCGAGAGCAGGATCTCCTCGTTGGTGGCATTCTCCT 98440 >seq3408 Length=510 Score = 125 bits (138), Expect = 9e-24 Identities = 130/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 83376 CATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCC 83435 ||| |||||| | |||||| ||||||||||| || ||||| || ||||| ||||| | Sbjct 313 CATGCTGGGCACCTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGGC 372 Query 83436 CCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTAC 83495 ||| | ||| || |||||||| ||| | ||| ||||| ||||| |||||| | | Sbjct 373 GCCGCGGG--TAG-CGAGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGC 429 Query 83496 CTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||||||| ||||| |||||||||||||| | || |||||||| |||| Sbjct 430 CTCAGAGCGACGCCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 477 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/217 (72%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 83148 TCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGT 83207 ||||||||||||||| | |||| ||| | ||| || ||| | | || |||| | Sbjct 1 TCTCGAAGTTCCAGGAGATGTCGGAGCGCCGCACGGGGCTCCACACCACGAAGCGGGGCT 60 Query 83208 CGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCGGCAGG--GCCTCTCGTAGGAAGG 83264 || ||| || ||| ||| | ||||| || || |||||| | || || ||| ||| Sbjct 61 CGGTCATCAG-GTGGTCAGGCTCGTCCACCGGGGCGGGCAGGTGGGCTTTC--AGGTAGG 117 Query 83265 CGAAGAGCGGATG--TGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 |||||| || || || ||| || ||||| |||| |||||||| ||| || | ||||| Sbjct 118 CGAAGACGGGGTGGGTGTCCT-GC-CCGTTCACCTGGCACTTCTGGAACAGGGTGAAGTT 175 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 |||||||||||| ||| || || |||||||| ||| Sbjct 176 GGGCTCGAAGCCGCCCCCCGGCCGCACGTGCTTGAGG 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608739017573720