Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq206 127 2e-24
seq11 125 7e-24
seq13 104 2e-17
seq37 102 8e-17
>seq206
Length=1612959
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 825228 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825169
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||| | || ||||| || | ||||||
Sbjct 825168 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825109
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | || | ||| ||||| |||||||| || | ||| ||||| |||||||||
Sbjct 825108 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825049
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| || |||| ||||| || ||| ||||| ||||||| |||
Sbjct 825048 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 825001
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 825456 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825397
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||| | || ||||| || | ||||||
Sbjct 825396 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825337
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | || | ||| ||||| |||||||| || | ||| ||||| |||||||||
Sbjct 825336 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825277
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| || |||| ||||| || ||| |||| |||| || |||
Sbjct 825276 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825229
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 825684 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825625
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||| | || ||||| || | ||||||
Sbjct 825624 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825565
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | || | ||| ||||| |||||||| || | ||| ||||| |||||||||
Sbjct 825564 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825505
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| || |||| ||||| || ||| |||| |||| || |||
Sbjct 825504 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825457
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 825912 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825853
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||| | || ||||| || | ||||||
Sbjct 825852 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825793
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | || | ||| ||||| |||||||| || | ||| ||||| |||||||||
Sbjct 825792 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825733
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| || |||| ||||| || ||| |||| |||| || |||
Sbjct 825732 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825685
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| |
Sbjct 826140 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 826081
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | | |||| || || | ||| | || ||||| || | ||||||
Sbjct 826080 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 826021
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | || | ||| ||||| |||||||| || | ||| ||||| |||||||||
Sbjct 826020 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825961
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| || |||| ||||| || ||| |||| |||| || |||
Sbjct 825960 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825913
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || || ||||| ||||||||| | || ||||| ||
Sbjct 826371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 826312
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||| | | | | | | |||| || || | ||| | || ||||| || | |||
Sbjct 826311 AGCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGAC 826252
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | | || | ||| ||||| |||||||| || | ||| ||||| ||||||
Sbjct 826251 CAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTAC 826192
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| || |||| ||||| || ||| |||| |||| || |||
Sbjct 826191 AACATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 826141
>seq11
Length=12384036
Score = 125 bits (138), Expect = 7e-24
Identities = 96/114 (84%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|||||||||||||| |||||||||||||| ||||| | |||||||| || |||| |||
Sbjct 4519363 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 4519422
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| |||||||| ||||||||||| || |||||||| | |||||||||
Sbjct 4519423 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 4519476
>seq13
Length=12215238
Score = 104 bits (114), Expect = 2e-17
Identities = 123/167 (74%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||||||| | || || || ||| |
Sbjct 3521139 ATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 3521080
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | ||| |||||| || || | |||||||||||||| ||| |||| |||
Sbjct 3521079 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCAG 3521020
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
|| | || |||| ||| ||||| |||||||| || | ||||||||
Sbjct 3521019 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCT 3520973
>seq37
Length=6782005
Score = 102 bits (112), Expect = 8e-17
Identities = 97/124 (78%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103
|| ||||| || || ||||| ||| ||||||| |||||| ||||| || |||||||||
Sbjct 2516472 GTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTCTCGGGCTCGTTCGCTGCTATATTTTGG 2516413
Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163
|| ||||| | ||||| ||||| || ||||||||| ||| || |||||| ||| ||
Sbjct 2516412 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATCAGCAGAGAT 2516353
Query 117164 GAGG 117167
||||
Sbjct 2516352 GAGG 2516349
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| || || | | ||||||||||| ||||| || |||||||| || |||||||||
Sbjct 2522279 GAGCCTCTTCTCAGAAAAAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCCGGAC 2522220
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| ||| ||||||||| ||||| |||| || || ||||| | |||||||||
Sbjct 2522219 ATATGGAAAATGTACAAACAGGCCCAGGCCTCCTTTTGGACGGCGGAGGAGGTG 2522166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515170299257680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |