Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq206 127 2e-24 seq11 125 7e-24 seq13 104 2e-17 seq37 102 8e-17 >seq206 Length=1612959 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 825228 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825169 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||| | || ||||| || | |||||| Sbjct 825168 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825109 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825108 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825049 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| ||||| ||||||| ||| Sbjct 825048 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGGC 825001 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 825456 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825397 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||| | || ||||| || | |||||| Sbjct 825396 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825337 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825336 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825277 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 825276 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825229 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 825684 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825625 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||| | || ||||| || | |||||| Sbjct 825624 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825565 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825564 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825505 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 825504 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825457 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 825912 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 825853 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||| | || ||||| || | |||||| Sbjct 825852 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 825793 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 825792 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825733 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 825732 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825685 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| | Sbjct 826140 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 826081 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | ||| | || ||||| || | |||||| Sbjct 826080 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCAG 826021 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | || | ||| ||||| |||||||| || | ||| ||||| ||||||||| Sbjct 826020 CAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAAC 825961 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 825960 ATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 825913 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || || ||||| ||||||||| | || ||||| || Sbjct 826371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 826312 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||| | | | | | | |||| || || | ||| | || ||||| || | ||| Sbjct 826311 AGCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGAC 826252 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | | || | ||| ||||| |||||||| || | ||| ||||| |||||| Sbjct 826251 CAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTAC 826192 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| || |||| ||||| || ||| |||| |||| || ||| Sbjct 826191 AACATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGGC 826141 >seq11 Length=12384036 Score = 125 bits (138), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||| ||||| | |||||||| || |||| ||| Sbjct 4519363 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 4519422 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 4519423 ATCTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 4519476 >seq13 Length=12215238 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || ||| | Sbjct 3521139 ATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 3521080 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | |||||||||||||| ||| |||| ||| Sbjct 3521079 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCAG 3521020 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 || | || |||| ||| ||||| |||||||| || | |||||||| Sbjct 3521019 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCT 3520973 >seq37 Length=6782005 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 || ||||| || || ||||| ||| ||||||| |||||| ||||| || ||||||||| Sbjct 2516472 GTTGCCTTTGCTGCAGTCGAAGGCATCTTCTTCTCGGGCTCGTTCGCTGCTATATTTTGG 2516413 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| | ||||| ||||| || ||||||||| ||| || |||||| ||| || Sbjct 2516412 CTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTCATCAGCAGAGAT 2516353 Query 117164 GAGG 117167 |||| Sbjct 2516352 GAGG 2516349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | | ||||||||||| ||||| || |||||||| || ||||||||| Sbjct 2522279 GAGCCTCTTCTCAGAAAAAACCCCCGCCGCTTCGTCATCTTCCCCATCCAGTACCCGGAC 2522220 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||| ||||||||| ||||| |||| || || ||||| | ||||||||| Sbjct 2522219 ATATGGAAAATGTACAAACAGGCCCAGGCCTCCTTTTGGACGGCGGAGGAGGTG 2522166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515170299257680