Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq13 118 1e-21
seq3 100 3e-16
seq53 95.1 1e-14
>seq13
Length=12215238
Score = 118 bits (130), Expect = 1e-21
Identities = 136/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 43005 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 43064
||||| || | ||| || ||| |||| || |||||||| ||||| || || || | ||||
Sbjct 3521336 TTGTAGTCGGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 3521395
Query 43065 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG 43124
||||||| || | || |||||||||| ||| || |||| || | | ||||||
Sbjct 3521396 TGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCG 3521455
Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | || || || | |||||||| |||||||| || ||||| |||||||| |||||
Sbjct 3521456 CTGGGCTCGACCTCCAAGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATG 3521515
Query 43185 TTT 43187
|||
Sbjct 3521516 TTT 3521518
>seq3
Length=19389198
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4124468 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4124527
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 4124528 ATACTAACGAGGA 4124540
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4128454 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4128395
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 4128394 ATACTAACGAGGA 4128382
Score = 89.7 bits (98), Expect = 6e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4127806 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 4127747
Query 60125 ATAC 60128
||||
Sbjct 4127746 ATAC 4127743
>seq53
Length=5534308
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 4136939 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGCTACTCACCACTA 4136998
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 4136999 TACTAACGAGGA 4137010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571763327362040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |