Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq25 405 4e-108 >seq25 Length=8201792 Score = 405 bits (448), Expect = 4e-108 Identities = 735/1060 (69%), Gaps = 28/1060 (3%) Strand=Plus/Plus Query 107568 CAGGCCCTCCTAGACAACCTGGA-AGT-GAAGAAAAAGCGGTCGCCTCTCACTGGCACCT 107625 ||||| ||||| ||||||||| | | ||| ||||| | | ||| ||| | | | Sbjct 6009960 CAGGCACTCCTCAGCAACCTGGAGACTAGAAACAAAAGGGCACCCCTGACACCCGAAGCG 6010019 Query 107626 ATTACCTCAACATAACCAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATA 107681 ||||| ||||| || | ||||| ||| ||||||||| ||| || ||||| Sbjct 6010020 --TACCTTAACATGACGAAGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGCTTCATT 6010073 Query 107682 CAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCAT 107741 ||||||||||||| || || ||| || || |||||||||||||| || || |||| Sbjct 6010074 GAGTTCCCACTGAGCAAGGAGGAGGCCGAGTTTCCCATTGCCTACTCCATAGTCATCCAC 6010133 Query 107742 GAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATAC 107801 | || || || | || || ||||| ||||| | || || | || ||||| | ||| Sbjct 6010134 AACAAAATCGAGATGTTCGAGCGGCTCCTGCGGTCTGTCTACGTGCCACAGAATGTCTAC 6010193 Query 107802 TGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATT 107861 ||||||||| |||| |||||||||| | ||| | ||||| || | |||||| Sbjct 6010194 TGTGTCCACATGGACAGCAAGTCCCCAGCTGCCTTCCAGGAGGCCGTGAGGGCCATCGCC 6010253 Query 107862 TCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG 107921 ||||||||||||| ||||| ||||||| ||| ||||| |||||||||||| Sbjct 6010254 GCCTGCTTCCCCAACGTCTTTGTGGCCAGCCGCCTGGAGAACGTGGTCTATGCCTCCTGG 6010313 Query 107922 TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGG 107981 || | |||| |||||||| ||||| ||| | ||| |||| |||||| | ||||| ||| Sbjct 6010314 TCACGCCTGCAGGCTGACCTCAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCGTGG 6010373 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 | ||| | || || || ||||| || ||||||||||| || |||||||| ||||||||| Sbjct 6010374 CACTACGTCCTCAACACCTGCGGCACCGACTTCCCCATCAAAACCAATGCGGAGATGGTC 6010433 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCC 108101 | |||||| ||||| || |||| ||||||| |||||||| ||| || || |||| Sbjct 6010434 CGCGCCCTCCAGATGCTGCAGGGGCAGAACAGCATGGAGTCGGAGAAGCCATC---GTCC 6010490 Query 108102 aaaaaaaa---TCGCTGGAAATACCGCTATGAGGTGACAGACACACTGT---ACCCTACC 108155 | || | || ||||| |||| | | || ||| || | | | | | || Sbjct 6010491 TACAAGCAGCTGCGGTGGAAGTACCACCACGAAGTGGGGGATGCCATCTCCAAGACATCC 6010550 Query 108156 AGCAAGATGAAGGACCCTC-CCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTT 108214 | | ||| | | || || || || | | ||||||||||| || | || || | Sbjct 6010551 ACCGAGAAGCTG--CCGTCACCGCT--CAGCTCGCCCATGTTCACGGGCAGCGCGTACAT 6010606 Query 108215 TGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA-AATCCCAAAGACTGG 108273 || || | || ||||| || || || |||| || |||| | | | | || | Sbjct 6010607 TGCGGTGACGCGGGCCTTCGTGCAGCACATCTTCGAGGACCCCACAGTGCTGCAG-TTTC 6010665 Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 | || |||| ||| |||||||| ||||||||||| ||| ||||||| ||||| |||| Sbjct 6010666 TGGAGTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCTACCCTCACCCGTG 6010725 Query 108334 CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 || | |||| ||| | | || | || ||||| | |||| ||||||| | Sbjct 6010726 TGCCTGGCGTGCCGGGCGCCATGCCCCACAACGACAAGTTCGAGCTCTCGGACATGAACG 6010785 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 || | || | || ||||| |||||||||| ||||| || ||||| ||| ||||| | Sbjct 6010786 CCCTGCCCCGCCTGGTCAAATGGCAGTACCTGGAGGGCGACACCAGCAAGGGAGCGCCCT 6010845 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | | |||||| | || | | | | ||| ||||||| ||||||| ||| ||| ||| Sbjct 6010846 ACCCGCCCTGCACCGGCCGGTACCAGCGCGCCGTCTGCATCTACGGGGTCGGAGACGTGT 6010905 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATA 108573 |||||| |||| | | || ||||||||||| |||||||| ||||| |||||| ||| Sbjct 6010906 CCTGGATGCTCCGGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCCAGGTGGACGATG 6010965 Query 108574 ACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGC 108613 || | | |||||| | || ||| |||| || || | ||| Sbjct 6010966 CCGCCATCCAGTGCCTCGAGGAGCACCTGCGCCACAGGGC 6011005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348236571314082