Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq206 96.9 3e-15 >seq13 Length=12215238 Score = 102 bits (112), Expect = 7e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || ||||| ||||| ||||| || |||||| | || || || | Sbjct 3521519 CAAACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTCGAGC 3521460 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 3521459 CCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCG 3521400 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| | || || || |||||||| ||| |||||||| Sbjct 3521399 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAC 3521359 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| |||||||| || || |||||| | || || || || Sbjct 3521140 CATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAG 3521081 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| ||||| | || |||||| || ||| | || || || || Sbjct 3521080 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCA 3521021 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| | || || ||||||||||| ||| ||||||| Sbjct 3521020 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA 3520985 >seq206 Length=1612959 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || |||||| | || || || || Sbjct 825229 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825170 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | || |||| |||||||| | || || ||||| Sbjct 825169 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825110 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || || || || Sbjct 825109 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825050 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || || || || | |||||||| || Sbjct 825049 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 825002 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || |||||| | || || || || Sbjct 825457 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825398 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | || |||| |||||||| | || || ||||| Sbjct 825397 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825338 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || || || || Sbjct 825337 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825278 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || || || || | ||||| || || Sbjct 825277 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || |||||| | || || || || Sbjct 825685 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825626 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | || |||| |||||||| | || || ||||| Sbjct 825625 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825566 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || || || || Sbjct 825565 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825506 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || || || || | ||||| || || Sbjct 825505 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825458 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || |||||| | || || || || Sbjct 825913 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825854 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | || |||| |||||||| | || || ||||| Sbjct 825853 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825794 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || || || || Sbjct 825793 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825734 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || || || || | ||||| || || Sbjct 825733 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825686 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||||||||| ||||| || |||||| | || || || || Sbjct 826141 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 826082 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | | || | || || | || |||| |||||||| | || || ||||| Sbjct 826081 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 826022 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || ||||||||||| ||| ||||||| || || || || || Sbjct 826021 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825962 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || || || || || || | ||||| || || Sbjct 825961 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||| ||||| || |||||| | || || || || Sbjct 826371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 826312 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||| | | || | || || | || |||| |||||||| | || || ||| Sbjct 826311 AGCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGAC 826252 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | | || ||||||||||| ||| ||||||| || || || || Sbjct 826251 CAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTAC 826192 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || |||||||| || || || || || || | ||||| || || Sbjct 826191 AACATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 826142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445724091196560