Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq13 102 7e-17
seq206 96.9 3e-15
>seq13
Length=12215238
Score = 102 bits (112), Expect = 7e-17
Identities = 119/161 (74%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
|||||||||| || || || ||||| ||||| ||||| || |||||| | || || || |
Sbjct 3521519 CAAACATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCTTGGAGGTCGAGC 3521460
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
| ||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 3521459 CCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCCG 3521400
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348
|||||||| | || || || |||||||| ||| ||||||||
Sbjct 3521399 ACCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGAC 3521359
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| |||||||| || || |||||| | || || || ||
Sbjct 3521140 CATGCAGATCTTTGTGAAGACCCTGACAGGTAAGACCATCACCTTGGAGGTGGAGCCCAG 3521081
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | |||| ||||| | || |||||| || ||| | || || || ||
Sbjct 3521080 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCGGATCA 3521021
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||| | || || ||||||||||| ||| |||||||
Sbjct 3521020 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA 3520985
>seq206
Length=1612959
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||||||||| ||||| || |||||| | || || || ||
Sbjct 825229 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825170
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | || |||| |||||||| | || || |||||
Sbjct 825169 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825110
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 825109 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825050
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || |||||||| || || || || || || | |||||||| ||
Sbjct 825049 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGCCTGAGGGGTGG 825002
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||||||||| ||||| || |||||| | || || || ||
Sbjct 825457 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825398
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | || |||| |||||||| | || || |||||
Sbjct 825397 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825338
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 825337 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825278
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || |||||||| || || || || || || | ||||| || ||
Sbjct 825277 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825230
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||||||||| ||||| || |||||| | || || || ||
Sbjct 825685 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825626
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | || |||| |||||||| | || || |||||
Sbjct 825625 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825566
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 825565 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825506
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || |||||||| || || || || || || | ||||| || ||
Sbjct 825505 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825458
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||||||||| ||||| || |||||| | || || || ||
Sbjct 825913 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 825854
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | || |||| |||||||| | || || |||||
Sbjct 825853 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 825794
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 825793 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825734
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || |||||||| || || || || || || | ||||| || ||
Sbjct 825733 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825686
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||||||||| ||||| || |||||| | || || || ||
Sbjct 826141 CATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 826082
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||| | | || | || || | || |||| |||||||| | || || |||||
Sbjct 826081 CGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGACCA 826022
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || ||||||||||| ||| ||||||| || || || || ||
Sbjct 826021 GCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTACAA 825962
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || |||||||| || || || || || || | ||||| || ||
Sbjct 825961 CATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 825914
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|||||||| || || || ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 826371 AACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 826312
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||| | | || | || || | || |||| |||||||| | || || |||
Sbjct 826311 AGCGATACCATTGAGAATGTGAAGGCCAAGATCCAGGACCAGGAAGGCATTCCTCCTGAC 826252
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | | || ||||||||||| ||| ||||||| || || || ||
Sbjct 826251 CAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGGCGTACCCTGTCTGACTAC 826192
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || |||||||| || || || || || || | ||||| || ||
Sbjct 826191 AACATCCAGAAAGAATCCACCCTGCACCTTGTGCTGCGTCTGAGAGGTGG 826142
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445724091196560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |