Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq37 123 3e-23 seq11 102 1e-16 seq313 95.1 2e-14 >seq37 Length=6782005 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | |||||| || || || |||||||| ||||| ||||||||||||| Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468 Query 33724 CAATAAGTCTCTCTCC 33739 ||| || |||||| || Sbjct 2516469 CAACAACTCTCTCACC 2516484 >seq11 Length=12384036 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| ||| || | ||| |||||||| |||||||| ||||||| || | || | Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| || || ||||| | Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406 Query 33724 C 33724 | Sbjct 4522405 C 4522405 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33834 TCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTT 33893 || ||| |||||| || || || || |||| ||| ||||||||||| ||||| || ||| Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312 Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| ||||| || || |||||||| | ||| || || | || |||||| Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || || || || || ||| Sbjct 4524067 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 4524008 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||||||||| ||||| Sbjct 4524007 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 4523973 >seq313 Length=537090 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 ||||| ||||||||||||| || || || |||| ||| || || || || ||||| ||| Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 62747 |||||||| ||||| |||| || || | || || ||||| || ||||| || || Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960 Query 62748 TTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62807 | | | ||| || || || || | || || |||||||| || || || | ||| | Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900 Query 62808 TTATTAGAGATTTCAGC 62824 | || ||| |||||| Sbjct 220899 CTGTTGGAGCGTTCAGC 220883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629757822437040