Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq37 111 2e-19 seq11 102 1e-16 seq5 100 4e-16 seq313 89.7 7e-13 >seq37 Length=6782005 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | || || || || || ||||| || ||||| ||||| ||||||| Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468 Query 36300 CAATAAGTCTCTCTCC 36315 ||| || |||||| || Sbjct 2516469 CAACAACTCTCTCACC 2516484 >seq11 Length=12384036 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| ||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406 Query 36300 C 36300 | Sbjct 4522405 C 4522405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || ||| |||||| || ||||| ||||||| ||| ||||||||||| ||||| || ||| Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | ||| || || | ||||||||| Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258 >seq5 Length=15909697 Score = 100 bits (110), Expect = 4e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||| | ||| ||||| |||||||| || || | |||||||||||||| ||||| Sbjct 7978332 CCTGCTCCGAATTTGCTGAAGTCTCTCTTCGACTGCAAGGTATATGCAGTCAGTCCAAGA 7978273 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599 || || |||| ||| || || || ||||||| |||| ||||||||||||| | || Sbjct 7978272 AAAACAGCAGCAGTGAGAATAAAGGCTTGCAAGACGATGGACACATCATAGAAACTCACT 7978213 Query 9600 ACA 9602 ||| Sbjct 7978212 ACA 7978210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCA---AAAGCTGTAACAGATGCAAGAACAGATTGATGAT 9283 |||||| || ||| || | |||| || || | ||| || | ||||||||||||||| Sbjct 7979659 TTATTTTTTGTTAAATGCCTCCAGTGAACGCAG---CAGGTGTAGGAACAGATTGATGAT 7979603 Query 9284 ATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAG 9343 |||||||||| |||||| | || | | || ||||| || || | || || || || Sbjct 7979602 GTCCAAGTAGAGATTGATCGCAGCCAGTATGTACTCTTCGGGGGATAATTTGTGCATCAG 7979543 Query 9344 TGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGAC 9403 | || |||||||| || || ||| | ||||| | ||| || || ||||| | || Sbjct 7979542 CAAATGAGTGTCATAAATTATAAATGCACAGAAGAGAAGTGCTCCGGCAGCAGCAAACAC 7979483 Query 9404 CAGCTCCACTGTTTCA 9419 || ||| | ||| ||| Sbjct 7979482 CAACTCTATTGTCTCA 7979467 >seq313 Length=537090 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 ||||| || |||||||||| || || || |||||||| || || || || ||||| ||| Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||| || || |||| || || | || || ||| | || ||||| || || Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960 Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600 | | | ||| || || ||||| | || || |||||||| || || || | ||| | Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900 Query 65601 TTATTAGAGATTTCAGC 65617 | || ||| |||||| Sbjct 220899 CTGTTGGAGCGTTCAGC 220883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| ||||| || || || || || || || | | Sbjct 211463 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTTGCTGCCAGGA 211404 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || ||||| || |||| || || || || || |||| || ||||| ||||||| Sbjct 211403 TAGCGTAATCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTGTCCA 211344 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | || | ||||| || || ||||| Sbjct 211343 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 211298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658110331174120