Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq37 111 2e-19
seq11 102 1e-16
seq5 100 4e-16
seq313 89.7 7e-13
>seq37
Length=6782005
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | || || || || || ||||| || ||||| ||||| |||||||
Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468
Query 36300 CAATAAGTCTCTCTCC 36315
||| || |||||| ||
Sbjct 2516469 CAACAACTCTCTCACC 2516484
>seq11
Length=12384036
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||| ||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406
Query 36300 C 36300
|
Sbjct 4522405 C 4522405
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469
|| ||| |||||| || ||||| ||||||| ||| ||||||||||| ||||| || |||
Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312
Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
|| ||||| || || || || |||||||| | ||| || || | |||||||||
Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258
>seq5
Length=15909697
Score = 100 bits (110), Expect = 4e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||| | ||| ||||| |||||||| || || | |||||||||||||| |||||
Sbjct 7978332 CCTGCTCCGAATTTGCTGAAGTCTCTCTTCGACTGCAAGGTATATGCAGTCAGTCCAAGA 7978273
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAACA 9599
|| || |||| ||| || || || ||||||| |||| ||||||||||||| | ||
Sbjct 7978272 AAAACAGCAGCAGTGAGAATAAAGGCTTGCAAGACGATGGACACATCATAGAAACTCACT 7978213
Query 9600 ACA 9602
|||
Sbjct 7978212 ACA 7978210
Score = 84.2 bits (92), Expect = 3e-11
Identities = 137/196 (70%), Gaps = 6/196 (3%)
Strand=Plus/Minus
Query 9227 TTATTTCTTATTAGATACTTCCA---AAAGCTGTAACAGATGCAAGAACAGATTGATGAT 9283
|||||| || ||| || | |||| || || | ||| || | |||||||||||||||
Sbjct 7979659 TTATTTTTTGTTAAATGCCTCCAGTGAACGCAG---CAGGTGTAGGAACAGATTGATGAT 7979603
Query 9284 ATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAG 9343
|||||||||| |||||| | || | | || ||||| || || | || || || ||
Sbjct 7979602 GTCCAAGTAGAGATTGATCGCAGCCAGTATGTACTCTTCGGGGGATAATTTGTGCATCAG 7979543
Query 9344 TGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGAC 9403
| || |||||||| || || ||| | ||||| | ||| || || ||||| | ||
Sbjct 7979542 CAAATGAGTGTCATAAATTATAAATGCACAGAAGAGAAGTGCTCCGGCAGCAGCAAACAC 7979483
Query 9404 CAGCTCCACTGTTTCA 9419
|| ||| | ||| |||
Sbjct 7979482 CAACTCTATTGTCTCA 7979467
>seq313
Length=537090
Score = 89.7 bits (98), Expect = 7e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480
||||| || |||||||||| || || || |||||||| || || || || ||||| |||
Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020
Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 65540
|||||||| || || |||| || || | || || ||| | || ||||| || ||
Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960
Query 65541 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 65600
| | | ||| || || ||||| | || || |||||||| || || || | ||| |
Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGGACGATGGCGT 220900
Query 65601 TTATTAGAGATTTCAGC 65617
| || ||| ||||||
Sbjct 220899 CTGTTGGAGCGTTCAGC 220883
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| |||| ||| || ||||||||||| ||||| || || || || || || || | |
Sbjct 211463 CACTGAATACTTTCTTAGTTTCTTTGTGCAGATTGGACACTGCAATCCTTGCTGCCAGGA 211404
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| || ||||| || |||| || || || || || |||| || ||||| |||||||
Sbjct 211403 TAGCGTAATCAGGGTGTTTGGTGGTCAGGGTTGCAGCCGTTTCAGCAGCCAGTGTGTCCA 211344
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | || | ||||| || || |||||
Sbjct 211343 GTTCCACTGTCGTGACACCACTGTACAGCCCTTGAATCACTTTCAT 211298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658110331174120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |