Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq37 87.8 2e-12 seq11 87.8 2e-12 >seq37 Length=6782005 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || || || | ||| ||||||| || | || | Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| ||||| || || || || ||||| || || || ||||||||||| | Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468 Query 14014 C 14014 | Sbjct 2516469 C 2516469 >seq11 Length=12384036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 14144 GTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAA 14203 |||||| ||||| || | ||||||||||||||| ||||| |||||||| || ||||| || Sbjct 4520354 GTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGCAATCTGGAA 4520295 Query 14204 ACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||| || || | |||||| | ||||||||| Sbjct 4520294 GCCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || || || ||||| | |||||||||| |||| || ||||||||||| || || Sbjct 4524070 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTG 4524011 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| || || |||||||| |||||||| ||||| Sbjct 4524010 CCTTCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 4523973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479682467816200