Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq37 123 3e-23
seq11 111 2e-19
seq313 86.0 8e-12
>seq37
Length=6782005
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| |
Sbjct 2516349 CCTCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 2516408
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| || || || || || |||||||| ||||| ||||| |||||||
Sbjct 2516409 TCAGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGG 2516468
Query 42207 CAATAAGTCTCTCTCC 42222
||| || |||||| ||
Sbjct 2516469 CAACAACTCTCTCACC 2516484
>seq11
Length=12384036
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||| ||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 4522525 CCTCATCTCGACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4522466
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| || || ||||| |
Sbjct 4522465 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACAGCTGCAAAAG 4522406
Query 42207 C 42207
|
Sbjct 4522405 C 4522405
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| |||||| || ||||| || |||| ||| ||||||||||| ||||| || |||
Sbjct 4520371 TCCTTAGAATCTTTGACGTATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTT 4520312
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | || || || || |||||||||
Sbjct 4520311 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGACTTGTACTTCT 4520258
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| || || || || || || || ||||| |||
Sbjct 4524067 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 4524008
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||||||||| |||||
Sbjct 4524007 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 4523973
>seq313
Length=537090
Score = 86.0 bits (94), Expect = 8e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 71383 TATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAA 71442
||||| || |||||||||| | | ||| |||||||| || || || || || ||||||
Sbjct 221079 TATGTTTCATATGGTCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAAGCACCATAA 221020
Query 71443 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAA 71502
|||||||| || ||||||| || || | || || ||||| || ||||| || ||
Sbjct 221019 TAAATGGTCTCAAAAATCTGCTGGTTCAAGCGCTGGGCCTCCGGACTTTCAAAGGGGTAT 220960
Query 71503 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552
| | | ||| || || ||||| | || || || ||||| || || ||
Sbjct 220959 CTCATCAAAATGAAGGCATCTGCCAGACCCTGCACACCAATGCCAATGGG 220910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671075500500680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |