Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq37 93.3 4e-14 seq11 82.4 7e-11 >seq37 Length=6782005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || ||||| || || | || || Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| || Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGC- 2516469 Query 13295 ATCAAC-CTTTCACC 13308 | |||| || ||||| Sbjct 2516470 AACAACTCTCTCACC 2516484 >seq11 Length=12384036 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483 || || || |||| | |||||||||||| ||||| ||||||||||| || || ||||| Sbjct 4520353 TATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGCAATCTGGAAG 4520294 Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||| ||||| | ||| |||| || || ||||| Sbjct 4520293 CCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430942517023386