Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq37 93.3 4e-14
seq11 82.4 7e-11
>seq37
Length=6782005
Score = 93.3 bits (102), Expect = 4e-14
Identities = 103/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || || || || || || || || || ||||| || || | || ||
Sbjct 2516351 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 2516410
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| ||
Sbjct 2516411 AGCCAAAATATAGCAGCGAACGAGCCCGAGAAGAAGATGCCTTCGACTGCAGCAAAGGC- 2516469
Query 13295 ATCAAC-CTTTCACC 13308
| |||| || |||||
Sbjct 2516470 AACAACTCTCTCACC 2516484
>seq11
Length=12384036
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 13424 TAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAA 13483
|| || || |||| | |||||||||||| ||||| ||||||||||| || || |||||
Sbjct 4520353 TATGTGTCAATCAGAAGGCTATACATTTCAGAATGTATATTTTCCATGGCAATCTGGAAG 4520294
Query 13484 CCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||||| ||||| | ||| |||| || || |||||
Sbjct 4520293 CCATAGAAACAACGAGCTTCTGTGACTTGTACTTC 4520259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430942517023386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |