Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015- 04-08] 7,593 sequences; 1,119,151,626 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq95 147 3e-30 seq27 138 2e-27 >seq95 Length=3687156 Score = 147 bits (162), Expect = 3e-30 Identities = 215/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || |||||||| | |||| |||| || |||||| || || || || | Sbjct 1591038 GGCACCCGGAACGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTCCAGG 1590979 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| ||||||| ||| |||| || ||||||| ||||| |||||||||||||| Sbjct 1590978 GATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTAC 1590919 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| ||| | | || || || |||||||||||||| || | ||| Sbjct 1590918 TCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCC 1590859 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || ||||| ||| ||||||| |||| || || | || || || | || Sbjct 1590858 ACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAA 1590799 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || ||||||||||| || || || || || || || | |||| ||| Sbjct 1590798 AACTCCAGCGCATCGATGTCTCCATAGAGCTCCTCCAGCTCTGCCGCCTTCTCCTCCTCT 1590739 Query 8972 CCTG 8975 |||| Sbjct 1590738 CCTG 1590735 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||| |||| ||||| || || || || || ||||| || || Sbjct 1588733 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGGTGC 1588674 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || || ||||| | ||||| || | |||||| || | ||||||| || |||||||| Sbjct 1588673 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1588614 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||| || |||| || || || |||| ||||| | ||||| || | | | ||| Sbjct 1588613 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 1588554 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844 | | || || || | |||||| ||| | | || ||||||||||||| |||| Sbjct 1588553 ATGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGATGACCGAGGGGGGGTACA 1588499 >seq27 Length=8028366 Score = 138 bits (152), Expect = 2e-27 Identities = 218/311 (70%), Gaps = 1/311 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 6818119 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6818178 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 6818179 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGG 6818238 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | ||||| | || |||| || ||||| || || || || || || | || | || Sbjct 6818239 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCAATTTCTACCATTG 6818298 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || |||||||| || || |||||||| || | || || | |||| ||||| Sbjct 6818299 TTTCGCCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 6818358 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| ||||| ||||| ||||||||||| Sbjct 6818359 TAGCATCTATGTCTCCATAAAGTTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 6818418 Query 8978 TTATTAATAAA 8988 ||||| || || Sbjct 6818419 TTATTGATGAA 6818429 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || || | || || ||| ||| |||||||| || ||||||| Sbjct 6820154 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6820213 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||| || ||||| || ||||| |||||||| | ||| || Sbjct 6820214 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 6820273 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | ||||| Sbjct 6820274 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 6820333 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | ||| ||||||||||| || || || ||| Sbjct 6820334 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCGATCATC 6820393 Query 9862 TG 9863 || Sbjct 6820394 TG 6820395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708457552139920