Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anser_20cygnoides_20domesticus_20[refseq_20GCF_5F000971095.1_202015-
04-08] 7,593 sequences; 1,119,151,626 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq95 147 3e-30
seq27 138 2e-27
>seq95
Length=3687156
Score = 147 bits (162), Expect = 3e-30
Identities = 215/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731
|| || |||||||| | |||| |||| || |||||| || || || || |
Sbjct 1591038 GGCACCCGGAACGCCACGTACGGGCACCTCTTCACGTTGAGGCACACGAGCTTCTCCAGG 1590979
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
| ||| ||||||| ||| |||| || ||||||| ||||| ||||||||||||||
Sbjct 1590978 GATGCTGTCTTGACTATCTCAAAGCCAGTTGCTCCGCCAAAGGTACTGGGTTTCCAGTAC 1590919
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
| |||||||||||| ||| | | || || || |||||||||||||| || | |||
Sbjct 1590918 TCTGGGGAGCAGATGGGGTTTCCGAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCC 1590859
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| ||||| || ||||| ||| ||||||| |||| || || | || || || | ||
Sbjct 1590858 ACCATGCTTTCTCCGAAAATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAA 1590799
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971
||||||| || ||||||||||| || || || || || || || | |||| |||
Sbjct 1590798 AACTCCAGCGCATCGATGTCTCCATAGAGCTCCTCCAGCTCTGCCGCCTTCTCCTCCTCT 1590739
Query 8972 CCTG 8975
||||
Sbjct 1590738 CCTG 1590735
Score = 100 bits (110), Expect = 4e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | |||||| |||| ||||| || || || || || ||||| || ||
Sbjct 1588733 TCACCGATGAGGATGAGCCGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGGTGC 1588674
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| || ||||| | ||||| || | |||||| || | ||||||| || ||||||||
Sbjct 1588673 TCCCGCTTCAGGATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 1588614
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||| || |||| || || || |||| ||||| | ||||| || | | | |||
Sbjct 1588613 CAGAGCCCCGGCAGGAGCCCGAACACCTCCTGACCCATCGCCAGCTGCTTCTCCTTGGGG 1588554
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACA 9844
| | || || || | |||||| ||| | | || ||||||||||||| ||||
Sbjct 1588553 ATGGCAGGCGGGTACACCATGTGGACCGGCGCTTCGATGACCGAGGGGGGGTACA 1588499
>seq27
Length=8028366
Score = 138 bits (152), Expect = 2e-27
Identities = 218/311 (70%), Gaps = 1/311 (0%)
Strand=Plus/Plus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||| | | |||
Sbjct 6818119 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 6818178
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||| ||||| | ||| || |||||||| || |||||||| | ||||
Sbjct 6818179 TATTGATTATTTCAAATCCCACTTTTCCACCAAAGGTGCTCGGCTTCCAGTACTCTGGGG 6818238
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| ||||| | || |||| || ||||| || || || || || || | || | ||
Sbjct 6818239 AACAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAATGGTGCGCCAATTTCTACCATTG 6818298
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || |||||||| || || |||||||| || | || || | |||| |||||
Sbjct 6818299 TTTCGCCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 6818358
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977
||| || |||||||| ||||| | ||||| ||||| ||||| |||||||||||
Sbjct 6818359 TAGCATCTATGTCTCCATAAAGTTCTTCCAGTTCAGCAGCCATTTCTTTTTCTCCTGTAA 6818418
Query 8978 TTATTAATAAA 8988
||||| || ||
Sbjct 6818419 TTATTGATGAA 6818429
Score = 125 bits (138), Expect = 1e-23
Identities = 173/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| ||| || || || | || || ||| ||| |||||||| || |||||||
Sbjct 6820154 ATGAGTCTAGTAGTTTGGAATAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 6820213
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| || || || | |||||||| || ||||| || ||||| |||||||| | ||| ||
Sbjct 6820214 ATGTCACAGACCCGATTGTGTTCTCTCAGCCATATTGTAGCATACATCATTAAACCTGGG 6820273
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| ||||| |||| || ||||||| | ||| | ||| || || | |||||
Sbjct 6820274 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGAACATGAGGAGGG 6820333
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | |||| || || || | ||| ||||||||||| || || || |||
Sbjct 6820334 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTGGGTGGATACATTTCCCCATCGATCATC 6820393
Query 9862 TG 9863
||
Sbjct 6820394 TG 6820395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708457552139920
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